Browse Element(s) Details


OsAffx.30690.1.S1_x_at

Description tigr:9638.m03262
TID=OsAffx.30690.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g078501/11lactoylglutathione lyase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07830NANA1+3752090..3755422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.46306.1.S1_x_at5/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.45976.1.S1_x_at4/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07850OsAffx.10957.1.S1_x_at10/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.10957.1.S1_at9/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.30690.1.S1_x_at1/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07860NANA1+3780493..3783045retrotransposon protein, putative, unclassified
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30690.1.S1_x_at--763--6211NONE
GAGGCTGGCGGGTTTCCTAAACCAT
NONE
OsAffx.30690.1.S1_x_at--89--7291NONE
GTGCCCCGGCGGCTGTGTTCAACTA
NONE
OsAffx.30690.1.S1_x_at--209--4271Chr10:19251125..19251236 (25 bp)
CCGGCGGCTGTGTTCAACTACGGCA
NONE
OsAffx.30690.1.S1_x_at--887--8672Chr01:3777240..3777262 (23 bp)
TGTGTTCAACTACGGCATCGGCATC
LOC_Os01g07850
OsAffx.30690.1.S1_x_at--77--1331Chr10:19251078..19251102 (25 bp)
AGAGGACACGGAGAGCATGCCACCC
NONE
OsAffx.30690.1.S1_x_at--351--6011Chr10:19251068..19251092 (25 bp)
GAGAGCATGCCACCCAAGATCTCCT
NONE
OsAffx.30690.1.S1_x_at--327--2811Chr10:19250928..19251077 (25 bp)
AAGATCTCCTTCACGAGCCAGGTCG
NONE
OsAffx.30690.1.S1_x_at--252--4351Chr10:19250911..19250935 (25 bp)
CCAGGTCGCGATAAGGGAACATTGT
NONE
OsAffx.30690.1.S1_x_at--473--5491Chr10:19250895..19250919 (25 bp)
GAACATTGTGTCGACGGAGACGTAA
NONE
OsAffx.30690.1.S1_x_at--233--9371Chr10:19250885..19250909 (25 bp)
TCGACGGAGACGTAAGGAGACGCTA
NONE
OsAffx.30690.1.S1_x_at--40--5771Chr10:19250877..19250901 (25 bp)
GACGTAAGGAGACGCTACGACGACA
NONE
Target Sequence 
GAGGCTGGCGGGTTTCCTAAACCATCGGGGCCAGGGTTACCGTGCCCCGGCGGCTGTGTTCAACTACGGCATCGGCATCC
ACCTGCTGCAGGCAGAGGACACGGAGAGCATGCCACCCAAGATCTCCTTCACGAGCCAGGTCGCGATAAGGGAACATTGT
GTCGACGGAGACGTAAGGAGACGCTACGACGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30690.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis