Browse Element(s) Details


Os.48017.1.S1_x_at

Description gb:CR293461
DB_XREF= gi:44680027
DB_XREF=CR293461
CLONE=p652c03p5
TID=Os.48017.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to full-Length cDNA from Arabidopsis thaliana (P0047B07.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g464205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48017.1.S1_x_at--912--2051Chr07:27698820..27698844 (25 bp)
ACTTCTGCTGCTACTGCCACGACAT
LOC_Os07g46420
Os.48017.1.S1_x_at--160--5771Chr07:27699121..27699145 (25 bp)
GACGATACTGATACCGTACCGTACG
LOC_Os07g46420
Os.48017.1.S1_x_at--837--6971Chr07:27699141..27699165 (25 bp)
GTACGAACCTGGTGCGGCTGCAAAC
LOC_Os07g46420
Os.48017.1.S1_x_at--964--9131Chr07:27699153..27699177 (25 bp)
TGCGGCTGCAAACCGGGCCGAATTA
LOC_Os07g46420
Os.48017.1.S1_x_at--601--4491Chr07:27699191..27699215 (25 bp)
GCCGATTTCGTCAAGAGGGTCGCCT
LOC_Os07g46420
Os.48017.1.S1_x_at--555--2951Chr07:27699276..27699300 (25 bp)
AATGGCGCAGGATGAATCCAACTAA
NONE
Os.48017.1.S1_x_at--235--6151Chr07:27699325..27699348 (24 bp)
GAGGTCGTCGTAGTAGTTGTGTATA
NONE
Os.48017.1.S1_x_at--550--4751Chr07:27699349..27699372 (24 bp)
GCTCAAGTTTTGATTCGAACCCGGA
NONE
Os.48017.1.S1_x_at--128--8351NONE
GGCGGTGAGGTGATTATTTGTATCC
NONE
Os.48017.1.S1_x_at--915--211Chr07:27699400..27699423 (24 bp)
ATTTGTATCCTGTTCTAATGGGTAT
NONE
Os.48017.1.S1_x_at--1097--5951Chr07:27699432..27699456 (25 bp)
GAGAATCTTGGGATCTTCACTGTGA
NONE
Target Sequence 
ACTTCTGCTGCTACTGCCACGACATGGCCTACGACACCCACGACCAGGCCCAGCTCCTCCGCGCCGACCTCGCCTTCCTC
CGCTGCCTCCAGAGCAGNCGCCAGACCCCNGCCCGCGACGGCATCGCCGCCGCCGCCATCTACCGCTCCATGTGCATCTT
CNNNCTCAAGACGATACTGATACCGTACCGTACGAACCTGGTGCGGCTGCAAACCGGGCCGAATTACGCCGACGCCTTCG
CCGATTTCGTCAAGAGGGTCGCCTCGTCGTCGGGGAGGCCGACCGGNNGCNACAAGCAGAGAATGTGAGAGCATTTGTGA
TCACAATGGCGCAGGATGAATCCAACTAATTGGAATTGGGGATTTTGAGGTCGTCGTAGTAGTTGTGTATAGCTCAAGTT
TTGATTCGAACCCGGAGAGGCGGTGAGGTGATTATTTGTATCCTGTTCTAATGGGTATTAGTTGATGAGAATCTTGGGAT
CTTCACTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48017.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis