Browse Element(s) Details


Os.6035.1.S1_at

Description gb:CB653593
DB_XREF= gi:29657318
DB_XREF=OSJNEc04M11.r
CLONE=OSJNEc04M11
TID=Os.6035.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.6035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine carboxypeptidase II-3 precursor (P0047B07.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4635011/11Serine carboxypeptidase II-3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein
LOC_Os07g46300Os.25569.1.S1_at10/117+27619282..27621942expressed protein
LOC_Os07g46310Os.6595.1.S1_a_at11/117+27622490..27625044CobN/magnesium chelatase family protein
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed
LOC_Os07g46360Os.30832.1.S1_at11/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46360OsAffx.10957.1.S1_x_at1/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6035.1.S1_at--76--1351Chr07:27637936..27637960 (25 bp)
AGAGTACCTGTCACTTCCAGCAGAT
LOC_Os07g46350
Os.6035.1.S1_at--1046--5031Chr07:27637917..27637941 (25 bp)
GCAGATACTCTGTCAACCAGCTCAA
LOC_Os07g46350
Os.6035.1.S1_at--453--9711Chr07:27637896..27637920 (25 bp)
TCAACCTTCCAGTTGCTGCTAAATG
LOC_Os07g46350
Os.6035.1.S1_at--995--5831Chr07:27637870..27637893 (24 bp)
GACCATGGTTTAGCAACACTCAGGG
LOC_Os07g46350
Os.6035.1.S1_at--889--5431Chr07:27637577..27637601 (25 bp)
GAACCTCAGCCTTGTAACCGTGAGA
LOC_Os07g46350
Os.6035.1.S1_at--645--1651Chr07:27637514..27637538 (25 bp)
AGCGCTTGTGCTTGTCCAGTATTTC
LOC_Os07g46350
Os.6035.1.S1_at--747--8231Chr07:27637483..27637507 (25 bp)
GGCAAAACGCTACCTGATTGCGAAA
LOC_Os07g46350
Os.6035.1.S1_at--205--3611Chr07:27637365..27637389 (25 bp)
CATTGTTGTCCCCATTCTAGATAGT
LOC_Os07g46350
Os.6035.1.S1_at--973--7051Chr07:27637261..27637285 (25 bp)
GTAACGGCAGTTCAGCAAACGATTT
LOC_Os07g46350
Os.6035.1.S1_at--739--1251Chr07:27637223..27637247 (25 bp)
AGATTGTAAGATGGCGCTCCTCTGA
LOC_Os07g46350
Os.6035.1.S1_at--905--4571Chr07:27637210..27637234 (25 bp)
GCGCTCCTCTGATCTGAATATTGCT
LOC_Os07g46350
Target Sequence 
AGAGTACCTGTCACTTCCAGCAGATACTCTGTCAACCAGCTCAACCTTCCAGTTGCTGCTAAATGGAGACCATGGTTTAG
CAACACTCAGGGTGTTGGAGACGTTGGTGGATACATTGTGCAGTACAAGGGGAACCTCAGCCTTGTAACCGTGAGAGGAG
CAGGCCATGAAGTCCCCAGCTACCAGCCACAGCGAGCGCTTGTGCTTGTCCAGTATTTCCTTGAAGGCAAAACGCTACCT
GATTGCGAAAAATGTGGAGAGGCTTAGTTATAAAAAAAAAACTTAACTTATGTTTACAAATATAAGTAGTATAATGTGCC
ATGACCACAAGTTGCNTTATTCCCATTGTTGTCCCCATTCTAGATAGTNCNAGAAAGANAGCAAAATGAAATGATATTAA
GAAGTACTCAAATATAGAAACCATTGCCCCCTGTATTTAGCAGATCATGTAACGGCAGTTCAGCAAACGATTTTATATAG
AGTAAAAGATTGTAAGATGGCGCTCCTCTGATCTGAATATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis