Browse Element(s) Details


OsAffx.28931.1.S1_at

Description tigr:9635.m04652
TID=OsAffx.28931.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4629011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein
LOC_Os07g46250OsAffx.21897.5.S1_x_at6/117+27596718..27599659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein
LOC_Os07g46300Os.25569.1.S1_at10/117+27619282..27621942expressed protein
LOC_Os07g46310Os.6595.1.S1_a_at11/117+27622490..27625044CobN/magnesium chelatase family protein
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28931.1.S1_at--1084--5771Chr07:27618607..27618631 (25 bp)
GACGAGCTCTCGTGCTACTCGGGAT
LOC_Os07g46290
OsAffx.28931.1.S1_at--86--3191Chr07:27618371..27618395 (25 bp)
CAAGGCGACGAACACGCTGTTTCAG
LOC_Os07g46290
OsAffx.28931.1.S1_at--702--1851Chr07:27618364..27618388 (25 bp)
ACGAACACGCTGTTTCAGGGCGAGT
LOC_Os07g46290
OsAffx.28931.1.S1_at--804--3871Chr07:27618355..27618379 (25 bp)
CTGTTTCAGGGCGAGTCGTCGAAGA
LOC_Os07g46290
OsAffx.28931.1.S1_at--146--1091Chr07:27618324..27618348 (25 bp)
AGGGCGTGTGGATCCACATCGACGA
LOC_Os07g46290
OsAffx.28931.1.S1_at--1099--1711Chr07:27618168..27618192 (25 bp)
ACCAGCTGCCGCGAAGGGCGGACAA
LOC_Os07g46290
OsAffx.28931.1.S1_at--579--1271Chr07:27618144..27618168 (25 bp)
AGATCATGAAGTGGTTGTCGCGGCC
LOC_Os07g46290
OsAffx.28931.1.S1_at--1031--8211Chr07:27618107..27618131 (25 bp)
GGCAACGGAGACGACCATCCGTGCA
LOC_Os07g46290
OsAffx.28931.1.S1_at--1064--8051Chr07:27618101..27618125 (25 bp)
GGAGACGACCATCCGTGCAGCCGTC
LOC_Os07g46290
OsAffx.28931.1.S1_at--214--2671Chr07:27617870..27617894 (25 bp)
AAGCGTCCGGGCTGCTTGCGACGTT
LOC_Os07g46290
OsAffx.28931.1.S1_at--480--1891Chr07:27617850..27617874 (25 bp)
ACGTTCTGGCTCTGGTGGCCGCAAT
LOC_Os07g46290
Target Sequence 
GACGAGCTCTCGTGCTACTCGGGATCCTCCGCGTCCTACTCCGGCACCTCGGCGAGGTCGTGCGTGTCCGACTCCGCGCA
GCGCGGTCGCCCCGTCGACCCCCTCCGCGTGCTCGCCGTCGTCGCCTCCCTCCGCCGCATCGACCCCAAGGTGCTCGCCA
AGGCGACGAACACGCTGTTTCAGGGCGAGTCGTCGAAGAAGAGGAAGGGCGTGTGGATCCACATCGACGACGATGAGGAC
GAGAGCGAGAGGAACAGCGCTGTGGCCAGCGAGGGGAGCACCGTCACGGGGACCGCGTCTGCAAGCTCCACGGCCACGTC
GGGGAGATCCCACCGGCCTCCGCGGGCGAGTGGCGGTGGCGACCAGCTGCCGCGAAGGGCGGACAAGATCATGAAGTGGT
TGTCGCGGCCGGGAGCGGTGCCGGCAACGGAGACGACCATCCGTGCAGCCGTCGGCGACAATGCTGGCACCAGCAAGGCG
CTGCGCNNNCTGCTGAAGCGTCCGGGCTGCTTGCGACGTTCTGGCTCTGGTGGCCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis