Browse Element(s) Details


OsAffx.28930.1.S1_at

Description tigr:9635.m04646
TID=OsAffx.28930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4624011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein
LOC_Os07g46210Os.12783.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46210OsAffx.28928.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46220OsAffx.28929.1.S1_at11/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_x_at9/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_at6/117+27577902..27582491expressed protein
LOC_Os07g46230OsAffx.5650.1.S1_at11/117+27583353..27585667expressed protein
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein
LOC_Os07g46250OsAffx.21897.5.S1_x_at6/117+27596718..27599659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28930.1.S1_at--26--8991Chr07:27590068..27590092 (25 bp)
TGAACGCCATCTTCGAGTTCGGCAA
LOC_Os07g46240
OsAffx.28930.1.S1_at--539--6711Chr07:27590052..27590076 (25 bp)
GTTCGGCAACAGCTGGGCCTTCGTC
LOC_Os07g46240
OsAffx.28930.1.S1_at--800--4571Chr07:27589856..27589880 (25 bp)
GCGCTGGTGGACTCGGACATCACGA
LOC_Os07g46240
OsAffx.28930.1.S1_at--439--391Chr07:27589838..27589862 (25 bp)
ATCACGAGCTCGGTGTGCTTCCTCA
LOC_Os07g46240
OsAffx.28930.1.S1_at--54--10631Chr07:27589455..27589739 (25 bp)
TTCGTCGGATACCTCATGACACGGA
LOC_Os07g46240
OsAffx.28930.1.S1_at--1054--2171Chr07:27589437..27589461 (25 bp)
ACACGGATTGGGATGGCGCTGCCAC
LOC_Os07g46240
OsAffx.28930.1.S1_at--157--2131Chr07:27589414..27589438 (25 bp)
ACAGGCGTGCGTGGGATGCTACTAC
LOC_Os07g46240
OsAffx.28930.1.S1_at--1082--4831Chr07:27589397..27589421 (25 bp)
GCTACTACGTGTGCTTCGCGGAGAA
LOC_Os07g46240
OsAffx.28930.1.S1_at--198--1451Chr07:27589376..27589400 (25 bp)
AGAACCCGACGTCGCGGCTGTTCGA
LOC_Os07g46240
OsAffx.28930.1.S1_at--680--6711Chr07:27589357..27589381 (25 bp)
GTTCGATCCCACGATACCGGAGCGG
LOC_Os07g46240
OsAffx.28930.1.S1_at--906--2791Chr07:27589326..27589350 (25 bp)
AAGATGCAGGAAGGCGCCGACCCGC
LOC_Os07g46240
Target Sequence 
TGAACGCCATCTTCGAGTTCGGCAACAGCTGGGCCTTCGTCCACATCGCGGCGTACGGGAGGGGGTTTGTGCAGGCGTCG
AGGAGCACGTGGGAGCAGTTCGAGAGGCTACAGGGGATGCCGGCGCTGGTGGACTCGGACATCACGAGCTCGGTGTGCTT
CCTCACCGGGGTCACCAGCGGCGCGCTCTGCGTCGCGCTCGCGGGGTCGTGGACGTTCGCCACGCACAAGCACTACACCG
CCACCGTCTCGCTGCTCGCCTTCTTCGTCGGATACCTCATGACACGGATTGGGATGGCGCTGCCACAGGCGTGCGTGGGA
TGCTACTACGTGTGCTTCGCGGAGAACCCGACGTCGCGGCTGTTCGATCCCACGATACCGGAGCGGCTGCACAAGATGCA
GGAAGGCGCCGACCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis