Browse Element(s) Details


Os.5127.1.S1_x_at

Description gb:AK069576.1
DB_XREF= gi:32979600
TID=Os.5127.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019J17, full insert sequence.
FL= gb:AK069576.1 gb:AK058607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g462209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46170OsAffx.28927.1.S1_x_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170Os.16136.1.S1_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_at9/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein
LOC_Os07g46210Os.12783.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46210OsAffx.28928.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46220OsAffx.28929.1.S1_at11/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_x_at9/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_at6/117+27577902..27582491expressed protein
LOC_Os07g46230OsAffx.5650.1.S1_at11/117+27583353..27585667expressed protein
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein
LOC_Os07g46250OsAffx.21897.5.S1_x_at6/117+27596718..27599659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5127.1.S1_x_at--723--9191Chr07:27581363..27581386 (24 bp)
TGCCTATCACTCTTGCATTGGTATA
LOC_Os07g46220
Os.5127.1.S1_x_at--84--9711Chr07:27581442..27581809 (25 bp)
TCAACAACTCGATGGATTCTCATAA
LOC_Os07g46220
Os.5127.1.S1_x_at--569--3111NONE
AATATCTGGCTTCATCTTGTCTGTT
NONE
Os.5127.1.S1_x_at--709--8051Chr07:27582138..27582162 (25 bp)
GGAGATGCAGGAATTCCACAGCTTC
LOC_Os07g46220
Os.5127.1.S1_x_at--159--7951Chr07:27582182..27582206 (25 bp)
GGATTTGCAACAACCCCTTGTGATC
LOC_Os07g46220
Os.5127.1.S1_x_at--615--2111Chr07:27582262..27582286 (25 bp)
ACATGTACATTCTTTGGCTGTTCAA
LOC_Os07g46220
Os.5127.1.S1_x_at--520--8331Chr07:27582277..27582301 (25 bp)
GGCTGTTCAATCTGTATCACTTTAC
LOC_Os07g46220
Os.5127.1.S1_x_at--863--10391Chr07:27582310..27582334 (25 bp)
TTTTGCCAGATCCATTTTGCCAGTA
LOC_Os07g46220
Os.5127.1.S1_x_at--335--9051NONE
TGCAGTTCCATGCTGACTATTCACA
NONE
Os.5127.1.S1_x_at--190--10211Chr07:27582440..27582464 (25 bp)
TATTCACAGAAGTTTTCAAGCGACT
LOC_Os07g46220
Os.5127.1.S1_x_at--331--4591Chr07:27582459..27582483 (25 bp)
GCGACTGTTGTATTCCGAATTCGAA
LOC_Os07g46220
Target Sequence 
TGCCTATCACTCTTGCATTGGTATATGTTGGAACAACACTAAAGGATCTATCAGATGTGACTCATGGCTGGAGTGAGATC
TCAACAACTCGATGGATTCTCATAATATCTGGCTTCATCTTGTCTGTTGTTTTGATTGTATGTGTTACAAGAATTGCAAA
ATCTTCTTTGGAGAAGGCATTGGCTGAGAATGGAGATGCAGGAATTCCACAGCTTCCTGTGGTGGCCTCTCCCTCGGATT
TGCAACAACCCCTTGTGATCAGAATTGACACGTCAAATGAAGATCATGAGAAGTGAATCNGTTGTTTACAACTTTACATG
TACATTCTTTGGCTGTTCAATCTGTATCACTTTACACTGTAGTTTTTGCCAGATCCATTTTGCCAGTAAAAGAAAAGAAA
AAGGAAAGGAAAAATTGTATTGTTAGGTAACACTACATAATTTCTTAATCCACGNGATAACATCCACGAGNCCAACTGCA
GTTCCATGCTGACTATTCACAGAAGTTTTCAAGCGACTGTTGTATTCCGAATTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5127.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis