Browse Element(s) Details


Os.16136.1.S1_at

Description gb:AK102349.1
DB_XREF= gi:32987558
TID=Os.16136.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091C24, full insert sequence.
FL= gb:AK102349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4617011/11rhomboid protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46120Os.47463.1.S1_x_at5/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46120Os.14491.2.S1_x_at4/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46130OsAffx.30966.4.S1_x_at2/117+27526858..27531683expressed protein
LOC_Os07g46140Os.35344.18.S1_x_at9/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140Os.35344.3.S1_x_at8/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140OsAffx.22940.5.S1_x_at3/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46150OsAffx.28926.1.S1_at11/117+27541672..27542187hypothetical protein
LOC_Os07g46160Os.11898.1.S1_at11/117+27543582..27548736speckle-type POZ protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_x_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170Os.16136.1.S1_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_at9/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein
LOC_Os07g46210Os.12783.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46210OsAffx.28928.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46220OsAffx.28929.1.S1_at11/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_x_at9/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_at6/117+27577902..27582491expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16136.1.S1_at--210--2331Chr07:27553082..27553106 (25 bp)
AAAGTTTGAGCCTTCCATGCAACGA
LOC_Os07g46170
Os.16136.1.S1_at--1031--751Chr07:27553108..27553132 (25 bp)
ATGTGCATTTTGTGAATTCCCGGTA
LOC_Os07g46170
Os.16136.1.S1_at--111--91Chr07:27553123..27553147 (25 bp)
ATTCCCGGTAGTGTTGTCAATGTCA
LOC_Os07g46170
Os.16136.1.S1_at--82--7091Chr07:27553138..27553162 (25 bp)
GTCAATGTCACATTCTCTGAGGACA
LOC_Os07g46170
Os.16136.1.S1_at--423--2571Chr07:27553264..27553288 (25 bp)
AACGGTGGTCCGAGAATGTGACATT
LOC_Os07g46170
Os.16136.1.S1_at--863--7031Chr07:27553304..27553328 (25 bp)
GTAAACCCTGCTTAACAACGTGTGA
LOC_Os07g46170
Os.16136.1.S1_at--1075--1231Chr07:27553352..27553376 (25 bp)
AGTTGCATGCATTACCACAGTTTGT
LOC_Os07g46170
Os.16136.1.S1_at--970--2131Chr07:27553368..27553392 (25 bp)
ACAGTTTGTGGTGGTGCCCTTTTGC
LOC_Os07g46170
Os.16136.1.S1_at--673--2431Chr07:27553403..27553427 (25 bp)
AAAAGCTTTTCTTTCCCTGCATGTT
LOC_Os07g46170
Os.16136.1.S1_at--207--10451Chr07:27553415..27553439 (25 bp)
TTCCCTGCATGTTTTAAAGACCACT
LOC_Os07g46170
Os.16136.1.S1_at--1131--2331Chr07:27553430..27553454 (25 bp)
AAAGACCACTGGACGCTTTGCGTGA
LOC_Os07g46170
Target Sequence 
AAAGTTTGAGCCTTCCATGCAACGACATGTGCATTTTGTGAATTCCCGGTAGTGTTGTCAATGTCACATTCTCTGAGGAC
ACAGAAGTTACAAGACACCATCGAATTACCCCTCGCGGCCTNTTTNCTNNTTTTTTCATTNGGTTCNCNTGCTTATCATC
TGTAATCAGTTTNNAGTGCATNGCAACGGTGGTCCGAGAATGTGACATTTACTGATTTTAGGAAGTAAACCCTGCTTAAC
AACGTGTGATGTTTTTTTTCTTAGGACAAGCTAGTTGCATGCATTACCACAGTTTGTGGTGGTGCCCTTTTGCCCCTGGT
AAAAAAAGCTTTTCTTTCCCTGCATGTTTTAAAGACCACTGGACGCTTTGCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis