Browse Element(s) Details


Os.11898.1.S1_at

Description gb:AK073258.1
DB_XREF= gi:32983281
TID=Os.11898.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024L05, full insert sequence.
FL= gb:AK073258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4616011/11speckle-type POZ protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46110NANA7+27516367..27519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46120Os.47463.1.S1_x_at5/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46120Os.14491.2.S1_x_at4/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46130OsAffx.30966.4.S1_x_at2/117+27526858..27531683expressed protein
LOC_Os07g46140Os.35344.18.S1_x_at9/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140Os.35344.3.S1_x_at8/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140OsAffx.22940.5.S1_x_at3/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46150OsAffx.28926.1.S1_at11/117+27541672..27542187hypothetical protein
LOC_Os07g46160Os.11898.1.S1_at11/117+27543582..27548736speckle-type POZ protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_x_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170Os.16136.1.S1_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_at9/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11898.1.S1_at--964--5851Chr07:27548221..27548245 (25 bp)
GAGCCCCTGCTTGTATTCGAACGAA
LOC_Os07g46160
Os.11898.1.S1_at--773--5351Chr07:27548271..27548295 (25 bp)
GAAGACGTGTGAAACCGCGGATTTA
LOC_Os07g46160
Os.11898.1.S1_at--608--3951Chr07:27548288..27548312 (25 bp)
CGGATTTAACGGCAGCCCTGATAAA
LOC_Os07g46160
Os.11898.1.S1_at--434--2431Chr07:27548311..27548335 (25 bp)
AAAACCTAGCTGGATTTCCTTGTGT
LOC_Os07g46160
Os.11898.1.S1_at--689--10671Chr07:27548326..27548350 (25 bp)
TTCCTTGTGTTGTTTCCGTGTAAAG
LOC_Os07g46160
Os.11898.1.S1_at--820--6711Chr07:27548358..27548382 (25 bp)
GTTCTATAACGGCACTTTTCTGGTG
LOC_Os07g46160
Os.11898.1.S1_at--395--1111Chr07:27548406..27548430 (25 bp)
AGTGTCTTGTGACTTCTATACCTCC
LOC_Os07g46160
Os.11898.1.S1_at--752--7411Chr07:27548473..27548497 (25 bp)
GTGTTCTACTGACTAGTGTACTGCA
LOC_Os07g46160
Os.11898.1.S1_at--792--10631Chr07:27548527..27548551 (25 bp)
TTCGCAGCCTGTGACCATAAAGTGC
LOC_Os07g46160
Os.11898.1.S1_at--545--2851Chr07:27548546..27548570 (25 bp)
AAGTGCACTCAGGTGGCACGGCAAA
LOC_Os07g46160
Os.11898.1.S1_at--62--4891Chr07:27548642..27548666 (25 bp)
GCTTAGGTCAGCTTTGTCGATTTGT
LOC_Os07g46160
Target Sequence 
GAGCCCCTGCTTGTATTCGAACGAAGTCCTTGATGGTGGCGATGCCAATGGAAGACGTGTGAAACCGCGGATTTAACGGC
AGCCCTGATAAAAACCTAGCTGGATTTCCTTGTGTTGTTTCCGTGTAAAGTGTTATAGTTCTATAACGGCACTTTTCTGG
TGCCATATTATATCATGCATGTTGTAGTGTCTTGTGACTTCTATACCTCCCCCTATCGTTGCTACTCTGGAGCTGAGTTG
TTGCTAATATATGTGTTCTACTGACTAGTGTACTGCAAAATTGCATTGCTGCGAAGCACATGGAGNTTCGCAGCCTGTGA
CCATAAAGTGCACTCAGGTGGCACGGCAAAGGTGGACTGGGCGCAAGGTTTTGTCGGTGGAAATAACGGNGCAGAATGTT
TCTATGGAAGTTTAACTTTGTGCTTAGGTCAGCTTTGTCGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis