Browse Element(s) Details


Os.12940.1.S1_at

Description gb:AK121027.1
DB_XREF= gi:37990650
TID=Os.12940.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050D20, full insert sequence.
FL= gb:AK121027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4618010/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46130OsAffx.30966.4.S1_x_at2/117+27526858..27531683expressed protein
LOC_Os07g46140Os.35344.18.S1_x_at9/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140Os.35344.3.S1_x_at8/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140OsAffx.22940.5.S1_x_at3/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46150OsAffx.28926.1.S1_at11/117+27541672..27542187hypothetical protein
LOC_Os07g46160Os.11898.1.S1_at11/117+27543582..27548736speckle-type POZ protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_x_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170Os.16136.1.S1_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_at9/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein
LOC_Os07g46210Os.12783.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46210OsAffx.28928.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46220OsAffx.28929.1.S1_at11/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_x_at9/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_at6/117+27577902..27582491expressed protein
LOC_Os07g46230OsAffx.5650.1.S1_at11/117+27583353..27585667expressed protein
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0048497biological_processmaintenance of floral organ identity
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12940.1.S1_at--159--10271Chr07:27564725..27564749 (25 bp)
TTTGATCTGGTCTTTTCTCGTTTTT
LOC_Os07g46180
Os.12940.1.S1_at--946--6811Chr07:27564744..27564768 (25 bp)
GTTTTTGAGCCGTGAAGAGTCCTTC
LOC_Os07g46180
Os.12940.1.S1_at--271--2791Chr07:27564758..27564782 (25 bp)
AAGAGTCCTTCAATGTCTCCGTTCA
LOC_Os07g46180
Os.12940.1.S1_at--75--2411Chr07:27564813..27564837 (25 bp)
AAAAGAGATGGAACCGGCCCCACTG
LOC_Os07g46180
Os.12940.1.S1_at--28--8411Chr07:27564828..27564852 (25 bp)
GGCCCCACTGTACATATGTATCTTA
LOC_Os07g46180
Os.12940.1.S1_at--1036--431Chr07:27564847..27564871 (25 bp)
ATCTTAGTTCTTAGCACTGTTCTGC
LOC_Os07g46180
Os.12940.1.S1_at--596--7251Chr07:27564913..27564937 (25 bp)
GTCCTGTATCAGTTTAGTTACCCAT
LOC_Os07g46180
Os.12940.1.S1_at--408--10031Chr07:27564942..27564966 (25 bp)
TATGTCGTTAGCCTAGCGGTTTACC
LOC_Os07g46180
Os.12940.1.S1_at--282--7871Chr07:27564959..27564983 (25 bp)
GGTTTACCGTCTCATTGGCAATGTC
LOC_Os07g46180
Os.12940.1.S1_at--765--7131Chr07:27565215..27565239 (25 bp)
GTCATACACTACTACAGCTTTCAAG
LOC_Os07g46180
Os.12940.1.S1_at--276--2431Chr07:27565301..27565325 (25 bp)
AAAAGCGGTTATTTCCATGTCTCAA
NONE
Target Sequence 
TTTGATCTGGTCTTTTCTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATC
TCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACG
GGAGGGAGTTCNATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTA
CCGTCTCATTGGCAATGTCTTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACT
GATTAGGGTTACACATGATCGAAGANCAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAGTGCTAATTTTCG
AGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAA
GTAATGAATTGTCATACACTACTACAGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATC
TTAGAATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis