Browse Element(s) Details


Os.12783.1.S1_at

Description gb:AU182660
DB_XREF= gi:13896324
DB_XREF=AU182660
CLONE=E20014
TID=Os.12783.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.12783 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4621011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46170OsAffx.28927.1.S1_x_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170Os.16136.1.S1_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_at9/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein
LOC_Os07g46210Os.12783.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46210OsAffx.28928.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46220OsAffx.28929.1.S1_at11/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_x_at9/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_at6/117+27577902..27582491expressed protein
LOC_Os07g46230OsAffx.5650.1.S1_at11/117+27583353..27585667expressed protein
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein
LOC_Os07g46250OsAffx.21897.5.S1_x_at6/117+27596718..27599659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12783.1.S1_at--137--131Chr07:27576599..27576623 (25 bp)
ATTAAGCTAGCGAATGTACCATGCA
LOC_Os07g46210
Os.12783.1.S1_at--296--6971Chr07:27576614..27576638 (25 bp)
GTACCATGCATTACTGAGCTTAAGC
LOC_Os07g46210
Os.12783.1.S1_at--1114--6871Chr07:27576688..27576712 (25 bp)
GTATTATGGTATTTTGCTGTGTGTT
LOC_Os07g46210
Os.12783.1.S1_at--254--3431Chr07:27576726..27576750 (25 bp)
CAGTCGCTTAACACTTCGTTTTTAT
LOC_Os07g46210
Os.12783.1.S1_at--106--3911Chr07:27576785..27576809 (25 bp)
CTGGTGTGTATGTTCTTGTGTTTGC
LOC_Os07g46210
Os.12783.1.S1_at--879--8771Chr07:27576803..27576827 (25 bp)
TGTTTGCTGGTCTGATCTTGGGCTA
LOC_Os07g46210
Os.12783.1.S1_at--254--6411Chr07:27576816..27576840 (25 bp)
GATCTTGGGCTAGCTATGGAAGTTT
LOC_Os07g46210
Os.12783.1.S1_at--168--6871Chr07:27576837..27576861 (25 bp)
GTTTGTGTACTAGTTCCTTGTAATG
LOC_Os07g46210
Os.12783.1.S1_at--540--2471Chr07:27576875..27576899 (25 bp)
AACACTGTGTACTCAAGCGTACGTG
LOC_Os07g46210
Os.12783.1.S1_at--940--9711Chr07:27576887..27576911 (25 bp)
TCAAGCGTACGTGTGCATGCATTGG
LOC_Os07g46210
Os.12783.1.S1_at--467--8051Chr07:27576916..27576940 (25 bp)
GGAGAACTAACCATTGCATTGCAAA
LOC_Os07g46210
Target Sequence 
ATTAAGCTAGCGAATGTACCATGCATTACTGAGCTTAAGCTGCGTGTTTTNTTCAGGATTAGCNCTGGTAAGTGTGATTA
AGAAGAGCNGTATTATGGTATTTTGCTGTGTGTTAATTAATTACCNCCAGTCGCTTAACACTTCGTTTTTATAGTATATA
TAGAGAGATATATACATATTGTAANACTGGTGTGTATGTTCTTGTGTTTGCTGGTCTGATCTTGGGCTAGCTATGGAAGT
TTGTGTACTAGTTCCTTGTAATGTTTAATTTCTAANAACACTGTGTACTCAAGCGTACGTGTGCATGCATTGGGGTTGGA
GAACTAACCATTGCATTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis