Browse Element(s) Details


Os.50138.1.S1_at

Description gb:AK119935.1
DB_XREF= gi:37989558
TID=Os.50138.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A11, full insert sequence.
FL= gb:AK119935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g461908/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46160Os.11898.1.S1_at11/117+27543582..27548736speckle-type POZ protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_x_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170Os.16136.1.S1_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_at9/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein
LOC_Os07g46210Os.12783.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46210OsAffx.28928.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46220OsAffx.28929.1.S1_at11/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_x_at9/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_at6/117+27577902..27582491expressed protein
LOC_Os07g46230OsAffx.5650.1.S1_at11/117+27583353..27585667expressed protein
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50138.1.S1_at--252--4971NONE
GCATCTCCTTCAGGAACACTTATAA
NONE
Os.50138.1.S1_at--473--6991Chr07:27569122..27569146 (25 bp)
GTACGACAAGAGCAAGCCCGTCCAG
LOC_Os07g46190
Os.50138.1.S1_at--621--9531Chr07:27569184..27569208 (25 bp)
TCTACGACTGCGCTTTCTACGGTTT
LOC_Os07g46190
Os.50138.1.S1_at--417--9931NONE
TACGGTTTCCAGGACATGCTGTGCG
NONE
Os.50138.1.S1_at--1015--2091NONE
ACATGCTGTGCGACCTCAAGGGCCG
NONE
Os.50138.1.S1_at--688--4851Chr07:27569441..27569465 (25 bp)
GCTACGGGCAGTCCATCTACGACAA
LOC_Os07g46190
Os.50138.1.S1_at--525--451Chr07:27569455..27569479 (25 bp)
ATCTACGACAACTGCACGCTGGAGT
LOC_Os07g46190
Os.50138.1.S1_at--736--8611Chr07:27569639..27569663 (25 bp)
TGGTGTTCTACCAGGTGTCCATGAC
LOC_Os07g46190
Os.50138.1.S1_at--1052--7731Chr07:27569652..27569676 (25 bp)
GGTGTCCATGACCAACATCGTCGTG
LOC_Os07g46190
Os.50138.1.S1_at--499--5531Chr07:27569757..27569781 (25 bp)
GAAAGAGCTAATGCGCCAACGTTCG
LOC_Os07g46190
Os.50138.1.S1_at--266--2591Chr07:27569774..27569798 (25 bp)
AACGTTCGCGTGTCTTGGTCATGTG
LOC_Os07g46190
Target Sequence 
GCATCTCCTTCAGGAACACTTATAACAAGTACGACAAGAGCAAGCCCGTCCAGGCGGTTGCGGCGCTCATCGGCGGCGAC
CGGAGCGCCTTCTACGACTGCGCTTTCTACGGTTTCCAGGACATGCTGTGCGACCTCAAGGGCCGCCACTACTTCCACCA
CTGCTACGTCAGGGGCGGCGTCGACTTCATCTTCGGCTACGGGCAGTCCATCTACGACAACTGCACGCTGGAGTCCAACA
TGCCGCCGCCGCCGTCGCCGCAGCAGCCGGGGTGGGTGACGGCGCACGCCCGGGTCACCGACGCCGACCCCGGTGGGCTG
GTGTTCAAGGGCGGCTCGCTGCTGGGCTCCGGGCAGCAGTACCTCGGGCGCGCGTGGAACCAGTTCGCCACCGTGGTGTT
CTACCAGGTGTCCATGACCAACATCGTCGTGCCCCAAGGATGGCAGCCCTGGAACTCCCCCAATGTGTAAGAAACTTTTT
TTTGTTTTGTTTTAAGATGATTATGTTCATTGAAAGAGCTAATGCGCCAACGTTCGCGTGTCTTGGTCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis