Browse Element(s) Details


OsAffx.5650.1.S1_at

Description tigr:9635.m04645
TID=OsAffx.5650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4623011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed
LOC_Os07g46190Os.50138.1.S1_at8/117+27567674..27569799Pectinesterase family protein, expressed
LOC_Os07g46200NANA7+27571586..27572716hypothetical protein
LOC_Os07g46210Os.12783.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46210OsAffx.28928.1.S1_at11/117+27575668..27576995expressed protein
LOC_Os07g46220OsAffx.28929.1.S1_at11/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_x_at9/117+27577902..27582491expressed protein
LOC_Os07g46220Os.5127.1.S1_at6/117+27577902..27582491expressed protein
LOC_Os07g46230OsAffx.5650.1.S1_at11/117+27583353..27585667expressed protein
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein
LOC_Os07g46250OsAffx.21897.5.S1_x_at6/117+27596718..27599659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5650.1.S1_at--978--9931Chr07:27585068..27585091 (24 bp)
TACGCTGCAATTTCCAGGTAGGCAA
LOC_Os07g46230
OsAffx.5650.1.S1_at--1156--5471Chr07:27585104..27585128 (25 bp)
GAACATGAGCATCGAGGCAGCCTAT
LOC_Os07g46230
OsAffx.5650.1.S1_at--928--9371Chr07:27585115..27585139 (25 bp)
TCGAGGCAGCCTATCAGAGAGCAAT
LOC_Os07g46230
OsAffx.5650.1.S1_at--287--2651Chr07:27585149..27585173 (25 bp)
AACCAGCTGGGTTCACCGTGAAGTA
LOC_Os07g46230
OsAffx.5650.1.S1_at--158--2231Chr07:27585181..27585205 (25 bp)
ACAAGTCCCTGGTCATTTTCAGAAC
LOC_Os07g46230
OsAffx.5650.1.S1_at--427--5491Chr07:27585202..27585226 (25 bp)
GAACATATTCACCAGCACACACAAG
LOC_Os07g46230
OsAffx.5650.1.S1_at--139--5991Chr07:27585374..27585398 (25 bp)
GAGACAACACCTGAGCTGAACTCAT
LOC_Os07g46230
OsAffx.5650.1.S1_at--812--991Chr07:27585401..27585425 (25 bp)
AGGATTTCACTTCACCGGTGGCCAG
LOC_Os07g46230
OsAffx.5650.1.S1_at--892--8611Chr07:27585429..27585453 (25 bp)
TGGTGAACCCGGCATTTGAGCCATC
LOC_Os07g46230
OsAffx.5650.1.S1_at--401--191Chr07:27585442..27585466 (25 bp)
ATTTGAGCCATCGAGATCCGGCACG
LOC_Os07g46230
OsAffx.5650.1.S1_at--796--4591Chr07:27585473..27585497 (25 bp)
GCGAAGCTGCGTGTGCTGAACGTCA
LOC_Os07g46230
Target Sequence 
TACGCTGCAATTTCCAGGTAGGCAAGAAGTTGATTCTGAACATGAGCATCGAGGCAGCCTATCAGAGAGCAATGAACACA
TTAACCAGCTGGGTTCACCGTGAAGTAAACCCACACAAGTCCCTGGTCATTTTCAGAACATATTCACCAGCACACACAAG
GGCTAGCAGCAATGGTGGTTGCGCCAAGGAGACAACACCTGAGCTGAACTCATCAAGGATTTCACTTCACCGGTGGCCAG
GGATGGTGAACCCGGCATTTGAGCCATCGAGATCCGGCACGGCGGCGGCGAAGCTGCGTGTGCTGAACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis