Browse Element(s) Details


Os.20617.1.S1_at

Description gb:AK068499.1
DB_XREF= gi:32978517
TID=Os.20617.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative non-cyanogenic beta-glucosidase precursor (P0047B07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155M12, full insert sequence.
FL= gb:AK068499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4628011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46240OsAffx.28930.1.S1_at11/117+27588854..27592466expressed protein
LOC_Os07g46250OsAffx.21897.5.S1_x_at6/117+27596718..27599659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein
LOC_Os07g46300Os.25569.1.S1_at10/117+27619282..27621942expressed protein
LOC_Os07g46310Os.6595.1.S1_a_at11/117+27622490..27625044CobN/magnesium chelatase family protein
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20617.1.S1_at--1076--3251Chr07:27616647..27616671 (25 bp)
CAAAAGGATCAAGCTGTGAAAGCCT
LOC_Os07g46280
Os.20617.1.S1_at--1062--2931Chr07:27616674..27616698 (25 bp)
AAGGCTTCCACTGTCAGATTTCAGA
LOC_Os07g46280
Os.20617.1.S1_at--764--6911Chr07:27616716..27616740 (25 bp)
GTATGCTCATCGTAGCGCGTTAGTT
LOC_Os07g46280
Os.20617.1.S1_at--268--3551Chr07:27616723..27616747 (25 bp)
CATCGTAGCGCGTTAGTTTAGCTTT
LOC_Os07g46280
Os.20617.1.S1_at--485--4491Chr07:27616730..27616754 (25 bp)
GCGCGTTAGTTTAGCTTTAGTTATA
LOC_Os07g46280
Os.20617.1.S1_at--95--3211Chr07:27616768..27616792 (25 bp)
CAATGTGGAGATTGGTAGCTTCACT
LOC_Os07g46280
Os.20617.1.S1_at--577--8591Chr07:27616780..27616804 (25 bp)
TGGTAGCTTCACTAGCTTCTGCAAC
LOC_Os07g46280
Os.20617.1.S1_at--666--2051Chr07:27616828..27616852 (25 bp)
ACTTCAATACAGATTTGTTCATCAG
LOC_Os07g46280
Os.20617.1.S1_at--795--8791Chr07:27616843..27616867 (25 bp)
TGTTCATCAGAACCGTAGGCTATTT
LOC_Os07g46280
Os.20617.1.S1_at--598--5431Chr07:27616852..27616876 (25 bp)
GAACCGTAGGCTATTTGTACAATAA
LOC_Os07g46280
Os.20617.1.S1_at--861--9751Chr07:27616874..27616898 (25 bp)
TAAAGAGCTGACAGAAGGGACTATT
LOC_Os07g46280
Target Sequence 
CAAAAGGATCAAGCTGTGAAAGCCTCAAAGGCTTCCACTGTCAGATTTCAGAACAAAGCTAACTCTAGCGTATGCTCATC
GTAGCGCGTTAGTTTAGCTTTAGTTATATGTGAAAAACAACCAATGTGGAGATTGGTAGCTTCACTAGCTTCTGCAACAG
AAGGAGAAATAAATGGATTGAACTTCAATACAGATTTGTTCATCAGAACCGTAGGCTATTTGTACAATAAAGAGCTGACA
GAAGGGACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis