Browse Element(s) Details


Os.25569.1.S1_at

Description gb:CA762284
DB_XREF= gi:25806323
DB_XREF=BR060007B10D08.ab1
CLONE=BR060007B10D08.ab1
TID=Os.25569.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 2, At2g41770 (P0047B07.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4630010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46250OsAffx.21897.5.S1_x_at6/117+27596718..27599659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein
LOC_Os07g46300Os.25569.1.S1_at10/117+27619282..27621942expressed protein
LOC_Os07g46310Os.6595.1.S1_a_at11/117+27622490..27625044CobN/magnesium chelatase family protein
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25569.1.S1_at--582--6051Chr07:27621408..27621432 (25 bp)
GAGATATTCTACATACCTCGAAGTC
LOC_Os07g46300
Os.25569.1.S1_at--493--7371Chr07:27621439..27621463 (25 bp)
GTGACTTTTCTTATCTAGTTCAAGC
LOC_Os07g46300
Os.25569.1.S1_at--189--131Chr07:27621480..27621504 (25 bp)
ATTCATCACAGTATTGCTATCCCCA
LOC_Os07g46300
Os.25569.1.S1_at--518--10151Chr07:27621497..27621521 (25 bp)
TATCCCCATGTTGTTCCTTGCAATG
LOC_Os07g46300
Os.25569.1.S1_at--563--4831Chr07:27621615..27621639 (25 bp)
GCTCAAGCACATGCAGTGTACCCAA
LOC_Os07g46300
Os.25569.1.S1_at--993--6091Chr07:27621679..27621703 (25 bp)
GAGTCATGGCTTCAGGTGATCCGTT
LOC_Os07g46300
Os.25569.1.S1_at--939--9811Chr07:27621736..27621760 (25 bp)
TAAAACTGTATACTTCGGACTGGGA
LOC_Os07g46300
Os.25569.1.S1_at--286--9551NONE
TCTTTGCCATCCACTTTAGCTGTAA
NONE
Os.25569.1.S1_at--910--10471Chr07:27621836..27621860 (25 bp)
TTAACACCCTTTTTGTTGAGCAAGA
LOC_Os07g46300
Os.25569.1.S1_at--381--6511Chr07:27621859..27621883 (25 bp)
GATATGCTGTTTTTTCTTGGTGTCA
LOC_Os07g46300
Os.25569.1.S1_at--817--3611Chr07:27621874..27621898 (25 bp)
CTTGGTGTCATTTACATGTGGAATC
LOC_Os07g46300
Target Sequence 
GAGATATTCTACATACCTCGAAGTCACATTGGTGACTTTTCTTATCTAGTTCAAGCTATTGGAAGCTTAGACATTCATCA
CAGTATTGCTATCCCCATGTTGTTCCTTGCAATGGATTTGCCAAGCAATTTTGAATCAAAAGCTTTGACCAAACTTATTT
ATAGGACAAATGTGCNATCAAATGCCACTTTTGCAACAATATACACTGCTCAAGCACATGCAGTGTACCCAATGAAGGTT
CAGAATGAGATAGATTTTGTAGAGCTAATNAGAGTCATGGCTTCAGGTGATCCGTTTNTTATGGAATTGATNTGATGTAG
GAATTCCCTAAAACTGTATACTTCGGACTGGGAAGGGAAAACAAAACAAAGTTTATTCAGTATATTGTTTTGTTTTTCTT
TGCCATCCACTTTAGCTGTAAGTTCAATTTAACACCCTTTTTGTTGAGCAAGATATGCTGTTTTTTCTTGGTGTCATTTA
CATGTGGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis