Browse Element(s) Details


Os.6801.2.S1_x_at

Description gb:AK061840.1
DB_XREF= gi:32971858
TID=Os.6801.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E02, full insert sequence.
FL= gb:AK061840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0204011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed
LOC_Os02g02030Os.51555.1.S1_at11/112+564717..565953expressed protein
LOC_Os02g02040Os.6801.2.S1_x_at11/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02040Os.37215.1.S1_at1/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02050Os.23574.1.S1_at11/112+573103..589743SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6801.2.S1_x_at--1017--6331Chr02:566732..566756 (25 bp)
GATGCTGGGCACGTTCGGGTACTTC
LOC_Os02g02040
Os.6801.2.S1_x_at--974--2931Chr02:566683..566707 (25 bp)
AAGGCGTCGCTCAAGTCGGACGTGT
LOC_Os02g02040
Os.6801.2.S1_x_at--810--10611Chr02:566653..566677 (25 bp)
TTCGGCGTGGTCATCCTGGAGCTCA
LOC_Os02g02040
Os.6801.2.S1_x_at--979--1291Chr02:566478..566502 (25 bp)
AGATGCAGATCATGGCGCACCTGGC
LOC_Os02g02040
Os.6801.2.S1_x_at--555--1731Chr02:566416..566440 (25 bp)
ACCATGAGCGAGGTCGTCCAGATCC
LOC_Os02g02040
Os.6801.2.S1_x_at--952--10831Chr02:566344..566368 (25 bp)
TTGGTCACCCGCATCGGGAGAAGCA
LOC_Os02g02040
Os.6801.2.S1_x_at--752--4591Chr02:566310..566334 (25 bp)
GCGACACGATGCACAGCACTAGGTT
LOC_Os02g02040
Os.6801.2.S1_x_at--461--10031Chr02:566291..566315 (25 bp)
TAGGTTAGCCGTGAAGTGCAGCGTC
LOC_Os02g02040
Os.6801.2.S1_x_at--1038--3911Chr02:566196..566220 (25 bp)
CGGCCATCTTCTTCAATTAGCTAGA
LOC_Os02g02040
Os.6801.2.S1_x_at--1018--911Chr02:566170..566194 (25 bp)
AGGCTACCAAATTAGTTGCATGCAT
LOC_Os02g02040
Os.6801.2.S1_x_at--284--631Chr02:566137..566161 (25 bp)
ATGCTGCTGCTGCTGTACAGACAGA
LOC_Os02g02040
Target Sequence 
GATGCTGGGCACGTTCGGGTACTTCGCGCCGGAGTACGCCATCGTGGGGAAGGCGTCGCTCAAGTCGGACGTGTTCAGCT
TCGGCGTGGTCATCCTGGAGCTCATCACGGGGCGGCGCCGCGGCTGCGCGACAGCCGGCTGGTGGTGGCGGTTCCCGCAG
GAGGAGATGCAGATCATGGCGCACCTGGCGCGGGAGTGCCTGCAGTGGGAGCCCGAGTCGCGTCCCACCATGAGCGAGGT
CGTCCAGATCCTCGCCACCATCGCTCCTTCCTCCCGCAAGCACGCCGCCGCCGCCACCTTGGTCACCCGCATCGGGAGAA
GCAGCAGCGCCGGCGACACGATGCACAGCACTAGGTTAGCCGTGAAGTGCAGCGTCGGAGAGAGTTGGCGATCGCCGGAG
ATGGAGGAGGAGACGGTGGTGGACTTGACGGAGCCACGGCTGGAGCCGGCCATCTTCTTCAATTAGCTAGATAGGCTACC
AAATTAGTTGCATGCATGTAATGTAATGCTGCTGCTGCTGTACAGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6801.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis