Browse Element(s) Details


Os.23574.1.S1_at

Description gb:AK061065.1
DB_XREF= gi:32971083
TID=Os.23574.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B09, full insert sequence.
FL= gb:AK058383.1 gb:AK061065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0205011/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed
LOC_Os02g02030Os.51555.1.S1_at11/112+564717..565953expressed protein
LOC_Os02g02040Os.6801.2.S1_x_at11/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02040Os.37215.1.S1_at1/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02050Os.23574.1.S1_at11/112+573103..589743SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02060OsAffx.447.1.S1_at8/112+600136..604671retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g02060Os.52609.1.S1_at1/112+600136..604671retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g02060OsAffx.22947.2.S1_x_at1/112+600136..604671retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g02070NANA2+607541..608879hypothetical protein
LOC_Os02g02080NANA2+610872..611297hypothetical protein
LOC_Os02g02090OsAffx.11863.1.S1_at11/112+613113..613532peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0006342biological_processchromatin silencing
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23574.1.S1_at--290--8111Chr02:573663..573687 (25 bp)
GGACGGTCTCCAGCACAGAGGTTGT
LOC_Os02g02050
Os.23574.1.S1_at--591--6631Chr02:573643..573667 (25 bp)
GTTGTGTGCCTTTCTGACGATGAAT
LOC_Os02g02050
Os.23574.1.S1_at--398--6051Chr02:573561..573585 (25 bp)
GAGTTATAGTCGATCTAACCCCTTT
LOC_Os02g02050
Os.23574.1.S1_at--899--2611Chr02:573545..573569 (25 bp)
AACCCCTTTAGTATTCTGATAGCAA
LOC_Os02g02050
Os.23574.1.S1_at--1039--351Chr02:573432..573456 (25 bp)
ATAATCAGTCTACCTTTCCTGCAAA
LOC_Os02g02050
Os.23574.1.S1_at--313--8851Chr02:573374..573398 (25 bp)
TGAGGTTACCCCTTTTCCTGCTGAA
LOC_Os02g02050
Os.23574.1.S1_at--731--2111Chr02:573312..573336 (25 bp)
ACATGTGGGTATTGTCTCTGCTATC
LOC_Os02g02050
Os.23574.1.S1_at--1063--7151Chr02:573299..573323 (25 bp)
GTCTCTGCTATCTCATTGACAGTAA
LOC_Os02g02050
Os.23574.1.S1_at--976--10751Chr02:573254..573278 (25 bp)
TTGACCTGTTGTAGCATTGGATCCA
LOC_Os02g02050
Os.23574.1.S1_at--422--31Chr02:573239..573263 (25 bp)
ATTGGATCCAGTCTGTCAACCCTGT
LOC_Os02g02050
Os.23574.1.S1_at--981--611Chr02:573140..573164 (25 bp)
ATGCTGGTGCATGTTACGACGTTTA
LOC_Os02g02050
Target Sequence 
GGACGGTCTCCAGCACAGAGGTTGTGTGCCTTTCTGACGATGAATCGTAGTGAGGAAGGTTCAGTCAAATTGTAGGTTAC
TAGTGCAATAGTTAACTGATTTGAGTTATAGTCGATCTAACCCCTTTAGTATTCTGATAGCAAGAGACGGACATCAATAG
AAGTACAGTGGGTCGGGGTTTCTTTTTTGGGGGATGACGGGTGCTAACATCAATTTGAATATCCATCTTGTATAATCAGT
CTACCTTTCCTGCAAATATCAAACCTTGTTGATACGGGTCTGGAAATGTTGAGGTTACCCCTTTTCCTGCTGAAGATAAT
ATGATGGGCTGCTGATATTTTTTTTGTTCTGACATGTGGGTATTGTCTCTGCTATCTCATTGACAGTAAGGGGCTTTACT
GTCAATGAGTTGACCTGTTGTAGCATTGGATCCAGTCTGTCAACCCTGTTGTTACAGAAATGTGAGTGTTTTTTTAGTTG
GAAATGTGGGTGCATTTTGTATATTGCTTAATCTTAGTGGCACATGCTGGTGCATGTTACGACGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis