Browse Element(s) Details


Os.7241.1.S1_at

Description gb:AK073200.1
DB_XREF= gi:32983223
TID=Os.7241.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023K10, full insert sequence.
FL= gb:AK073200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0202011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed
LOC_Os02g02030Os.51555.1.S1_at11/112+564717..565953expressed protein
LOC_Os02g02040Os.6801.2.S1_x_at11/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02040Os.37215.1.S1_at1/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02050Os.23574.1.S1_at11/112+573103..589743SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7241.1.S1_at--149--10711Chr02:562461..562485 (25 bp)
TTGCCCTCTGCGAGAATGACAAAGT
LOC_Os02g02020
Os.7241.1.S1_at--981--2811Chr02:562423..562447 (25 bp)
AAGTTGGCTGATTTTGCATTGGACA
LOC_Os02g02020
Os.7241.1.S1_at--1025--2111Chr02:562401..562425 (25 bp)
ACAGGGACTTTGATGTCAGCTTCTC
LOC_Os02g02020
Os.7241.1.S1_at--611--7111Chr02:562387..562411 (25 bp)
GTCAGCTTCTCAACCTATGACAGAG
LOC_Os02g02020
Os.7241.1.S1_at--1029--9551Chr02:562362..562386 (25 bp)
TCTTGGAGGCCCTGTACACTGAGGA
LOC_Os02g02020
Os.7241.1.S1_at--53--4971Chr02:562324..562348 (25 bp)
GCATACTCCATGCTTTGCAAGATCA
LOC_Os02g02020
Os.7241.1.S1_at--560--10691Chr02:562268..562292 (25 bp)
TTGCGATGCCCTGATGGACAGCTTA
LOC_Os02g02020
Os.7241.1.S1_at--625--7691Chr02:562234..562258 (25 bp)
GGGTACTCAAAGCAAGCAGACATTT
LOC_Os02g02020
Os.7241.1.S1_at--54--7791Chr02:562147..562171 (25 bp)
GGTGCGTAGCGGTTTATCCATTCAT
LOC_Os02g02020
Os.7241.1.S1_at--115--6491Chr02:562117..562141 (25 bp)
GATAGTACTATCTTCCTTTTGAATT
LOC_Os02g02020
Os.7241.1.S1_at--968--9111Chr02:562059..562083 (25 bp)
TGCTGAGCTATTGGCCAAGTGGTCT
LOC_Os02g02020
Target Sequence 
TTGCCCTCTGCGAGAATGACAAAGTGATGGAGGCACATAAGTTGGCTGATTTTGCATTGGACAGGGACTTTGATGTCAGC
TTCTCAACCTATGACAGAGTCTTGGAGGCCCTGTACACTGAGGAGAAGACATTGCCTGCATACTCCATGCTTTGCAAGAT
CAAGAACAAAGGAGGTGTCGTGGATCAAAAGGGTTGCGATGCCCTGATGGACAGCTTAAAAGCTGGAGGGTACTCAAAGC
AAGCAGACATTTTGTCTAGGATATTGGCAGAGAATGCATCATCAACATCCAAGAGGGGCAAACGGGTTGCCATGGGTGCG
TAGCGGTTTATCCATTCATGAGAAGATAGTACTATCTTCCTTTTGAATTGAAGAGCAGTGTTTTATTTCTTTTGTTTTTG
CTTGCTGAGCTATTGGCCAAGTGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis