Browse Element(s) Details


Os.24700.1.A1_at

Description gb:AK106946.1
DB_XREF= gi:32992155
TID=Os.24700.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D11, full insert sequence.
FL= gb:AK106946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0198011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed
LOC_Os02g02030Os.51555.1.S1_at11/112+564717..565953expressed protein
LOC_Os02g02040Os.6801.2.S1_x_at11/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02040Os.37215.1.S1_at1/112+566048..572465Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24700.1.A1_at--995--6471Chr02:546338..546362 (25 bp)
GATACTTATACAACCATCGGCATGG
LOC_Os02g01980
Os.24700.1.A1_at--534--9791Chr02:546217..546331 (25 bp)
TAAGCCCCAATAACTATGGCCTGAC
LOC_Os02g01980
Os.24700.1.A1_at--1049--5111Chr02:546121..546145 (25 bp)
GCACACATCCCAGCAAGTACATATA
LOC_Os02g01980
Os.24700.1.A1_at--1107--2831Chr02:546107..546131 (25 bp)
AAGTACATATACTGGGATGCTGCCC
LOC_Os02g01980
Os.24700.1.A1_at--310--631Chr02:546091..546115 (25 bp)
ATGCTGCCCACCACACGGAGAGAAT
LOC_Os02g01980
Os.24700.1.A1_at--592--3131Chr02:546021..546045 (25 bp)
AATTTATGCCTAGCTCACGATTGTG
LOC_Os02g01980
Os.24700.1.A1_at--456--7351Chr02:545999..546023 (25 bp)
GTGAATTCAGATTTGCAGCCCGACA
LOC_Os02g01980
Os.24700.1.A1_at--612--9751Chr02:545958..545982 (25 bp)
TAATTTACTGTGGTGCATACGAGCA
LOC_Os02g01980
Os.24700.1.A1_at--671--291Chr02:545848..545872 (25 bp)
ATAGACGCCCAAGACCTATGATGTC
LOC_Os02g01980
Os.24700.1.A1_at--748--7031Chr02:545776..545800 (25 bp)
GTACACTTGACAACTCTTACAGGGT
LOC_Os02g01980
Os.24700.1.A1_at--776--671Chr02:545701..545725 (25 bp)
ATGAAATTGCTTCCAGCCTTCTGTA
LOC_Os02g01980
Target Sequence 
GATACTTATACAACCATCGGCATGGCAACAATAAGCCCCAATAACTATGGCCTGACAGAAACCTCAAGAGGTTGTTGTGG
AACAGGAGTTATTGAAGTTGGGCAAACATGCAGAGGCCGAAGNGCATGCACACATCCCAGCAAGTACATATACTGGGATG
CTGCCCACCACACGGAGAGAATGAACCAAATTATCACAGAGGAAGTGATAATGAACTCAATTGGAGAAATTTATGCCTAG
CTCACGATTGTGAATTCAGATTTGCAGCCCGACAAATCAATTTAGCATCCTAATTTACTGTGGTGCATACGAGCACATAG
AACAATAGTTCAGTAGAAGAGATCGATTATATAATATTTTTCATACAAAATATGCTGTGTGCGAAANAGAGTGTTACATN
ATAGACGCCCAAGACCTATGATGTCAACTGAAGTGGTTACCATTNATTCTACTTTCACTGTGATCTATAATTGTACACTT
GACAACTCTTACAGGGTGTATGTTAGTTTGCAAAGTTGTCTAGCAGGTGATATCTTGATTACGCAAAATGAAATTGCTTC
CAGCCTTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24700.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis