Browse Element(s) Details


OsAffx.2483.1.S1_at

Description tigr:9630.m00100
TID=OsAffx.2483.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0201010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed
LOC_Os02g02030Os.51555.1.S1_at11/112+564717..565953expressed protein
LOC_Os02g02040Os.6801.2.S1_x_at11/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02040Os.37215.1.S1_at1/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02050Os.23574.1.S1_at11/112+573103..589743SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2483.1.S1_at--893--8011Chr02:559110..559134 (25 bp)
GGAGGAAAGCCATCAAGAGAAACTT
LOC_Os02g02010
OsAffx.2483.1.S1_at--1039--9811Chr02:559141..559165 (25 bp)
TAAAGAAGCAGACCGCAAGGAGACG
LOC_Os02g02010
OsAffx.2483.1.S1_at--1068--1451NONE
AGAAGATCACCAGCCAGCAGCTGAA
NONE
OsAffx.2483.1.S1_at--11--4691Chr02:559767..559791 (25 bp)
GCGGTACCTGGCGAATTTCTTTGAT
LOC_Os02g02010
OsAffx.2483.1.S1_at--465--3911Chr02:559774..559798 (25 bp)
CTGGCGAATTTCTTTGATTTTGAGC
LOC_Os02g02010
OsAffx.2483.1.S1_at--518--571Chr02:559822..559846 (25 bp)
ATCCTCAACGAGATGCCCGAGGAAG
LOC_Os02g02010
OsAffx.2483.1.S1_at--73--5891Chr02:559846..559870 (25 bp)
GAGCGTGCCGGAGAAAATCAACTTG
LOC_Os02g02010
OsAffx.2483.1.S1_at--860--5971Chr02:559856..559880 (25 bp)
GAGAAAATCAACTTGCTGCCTTCGC
LOC_Os02g02010
OsAffx.2483.1.S1_at--174--9111Chr02:559869..559893 (25 bp)
TGCTGCCTTCGCTGATAGTATTATG
LOC_Os02g02010
OsAffx.2483.1.S1_at--948--6871Chr02:559886..559910 (25 bp)
GTATTATGGAACGTCGCAGGCTCCT
LOC_Os02g02010
OsAffx.2483.1.S1_at--331--5011Chr02:559901..559925 (25 bp)
GCAGGCTCCTATACCAGAGATGCAT
LOC_Os02g02010
Target Sequence 
GGAGGAAAGCCATCAAGAGAAACTTTAAGGCTAAAGAAGCAGACCGCAAGGAGACGGAAGAGGAGGGCAATCAGGTGAAG
AAGATCACCAGCCAGCAGCTGAAGAGGAAGAGGAAGAAGGAAGAAGACGCCAGCGAGAAGAAGAAGAAGAAGAAGCGGCA
GACGGAGGAAGCAGAAGCGGAGAAGAAGATTGAGGCGAGGAAAGCCAAAAAAGAGGCGTACGAGCGGTACCTGGCGAATT
TCTTTGATTTTGAGCCCTTCCCACGCACACCCGACCACATCCTCAACGAGATGCCCGAGGAAGAGCGTGCCGGAGAAAAT
CAACTTGCTGCCTTCGCTGATAGTATTATGGAACGTCGCAGGCTCCTATACCAGAGATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis