Browse Element(s) Details


OsAffx.11863.1.S1_at

Description tigr:9630.m00110
TID=OsAffx.11863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peptidyl-prolyl cis-trans isomerase (ec 5.2.1.8) (ppiase) (rotamase) (cyclophilin) (cyclosporin a-binding protein) (cph) (ppi-ii). (bakers yeast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0209011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02050Os.23574.1.S1_at11/112+573103..589743SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02060OsAffx.447.1.S1_at8/112+600136..604671retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g02060Os.52609.1.S1_at1/112+600136..604671retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g02060OsAffx.22947.2.S1_x_at1/112+600136..604671retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g02070NANA2+607541..608879hypothetical protein
LOC_Os02g02080NANA2+610872..611297hypothetical protein
LOC_Os02g02090OsAffx.11863.1.S1_at11/112+613113..613532peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein
LOC_Os02g02100NANA2+619851..622715retrotransposon protein, putative, unclassified
LOC_Os02g02110Os.27016.3.S1_x_at4/112+623174..626119dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase, putative
LOC_Os02g02120Os.27382.2.S1_at11/112+627685..630534wall-associated kinase 3, putative, expressed
LOC_Os02g02130Os.38814.1.S1_at7/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50740.1.S1_x_at4/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50728.1.S1_x_at3/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50740.1.S1_at2/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50741.1.S1_at2/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50727.1.S1_x_at1/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02140Os.50672.1.S2_x_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S2_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S1_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S1_x_at11/112+637013..640452Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005624cellular_componentmembrane fraction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0016018molecular_functioncyclosporin A binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11863.1.S1_at--169--4531Chr02:613178..613202 (25 bp)
GCCGCTCCACTACAAAGGGCTTTGT
LOC_Os02g02090
OsAffx.11863.1.S1_at--411--3291Chr02:613190..613214 (25 bp)
CAAAGGGCTTTGTCTTTCACAGCAT
LOC_Os02g02090
OsAffx.11863.1.S1_at--236--7151Chr02:613201..613225 (25 bp)
GTCTTTCACAGCATTATCCCAGGAT
LOC_Os02g02090
OsAffx.11863.1.S1_at--811--331Chr02:613224..613248 (25 bp)
ATACATGTGGAAGGGCGGCGACTTC
LOC_Os02g02090
OsAffx.11863.1.S1_at--974--10611Chr02:613246..613270 (25 bp)
TTCGTCAAGGACCATGGCACCGGCG
LOC_Os02g02090
OsAffx.11863.1.S1_at--140--4711Chr02:613268..613292 (25 bp)
GCGGCGAGTTCATTTGCGGCGACAC
LOC_Os02g02090
OsAffx.11863.1.S1_at--420--4591Chr02:613286..613310 (25 bp)
GCGACACCTTCCCAATGAGAATTTC
LOC_Os02g02090
OsAffx.11863.1.S1_at--101--9311Chr02:613347..613371 (25 bp)
TCCGCCGAAAACAACATCTCACAGT
LOC_Os02g02090
OsAffx.11863.1.S1_at--743--4651Chr02:613381..613405 (25 bp)
GCGTGCCCTGGTTCGATGGCAACTA
LOC_Os02g02090
OsAffx.11863.1.S1_at--842--2531Chr02:613401..613425 (25 bp)
AACTACGTCGTCTTCGGCTGTATCA
LOC_Os02g02090
OsAffx.11863.1.S1_at--301--8031Chr02:613466..613490 (25 bp)
GGAGGTCAAGATTGCCAACCGTGGC
LOC_Os02g02090
Target Sequence 
GCCGCTCCACTACAAAGGGCTTTGTCTTTCACAGCATTATCCCAGGATACATGTGGAAGGGCGGCGACTTCGTCAAGGAC
CATGGCACCGGCGGCGAGTTCATTTGCGGCGACACCTTCCCAATGAGAATTTCCTACTTCCACACGACCGCCCGTGGTTA
CCCAACGGCTCCGCCGAAAACAACATCTCACAGTTCTTTACCCGCGTGCCCTGGTTCGATGGCAACTACGTCGTCTTCGG
CTGTATCATCTCCGGCTTCCACAACCTCAAGGCCATCGAAGCGGAGGTGGAGGTCAAGATTGCCAACCGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis