Browse Element(s) Details


Os.50728.1.S1_x_at

Description gb:AY220643.1
DB_XREF= gi:29292957
TID=Os.50728.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50728 (NCBI UniGene Cluster)
UG_TITLE=Box CD snoRNA J15.5, complete sequence
DEF=Oryza sativa box CD snoRNA J15.5, complete sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0345011/1160S ribosomal protein L37, putative, expressed
LOC_Os02g021303/1160S ribosomal protein L37, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50728.1.S1_x_at--1062--1974Chr08:1613619..1613643 (25 bp)
ACTGCAACAATATGATGGGAGCTTA
LOC_Os08g03450
Os.50728.1.S1_x_at--394--9012Chr08:1613621..1613645 (25 bp)
TGCAACAATATGATGGGAGCTTAGC
LOC_Os08g03450
Os.50728.1.S1_x_at--305--5152Chr08:1613622..1613646 (25 bp)
GCAACAATATGATGGGAGCTTAGCT
LOC_Os08g03450
Os.50728.1.S1_x_at--891--3271Chr08:1613623..1613647 (25 bp)
CAACAATATGATGGGAGCTTAGCTC
LOC_Os08g03450
Os.50728.1.S1_x_at--939--2231Chr08:1613625..1613649 (25 bp)
ACAATATGATGGGAGCTTAGCTCCT
LOC_Os08g03450
Os.50728.1.S1_x_at--346--10131Chr08:1613629..1613653 (25 bp)
TATGATGGGAGCTTAGCTCCTGTGA
LOC_Os08g03450
Os.50728.1.S1_x_at--491--711Chr08:1613630..1613654 (25 bp)
ATGATGGGAGCTTAGCTCCTGTGAT
LOC_Os08g03450
Os.50728.1.S1_x_at--313--811Chr08:1613633..1613657 (25 bp)
ATGGGAGCTTAGCTCCTGTGATTCC
LOC_Os08g03450
Os.50728.1.S1_x_at--569--8631Chr08:1613634..1613658 (25 bp)
TGGGAGCTTAGCTCCTGTGATTCCT
LOC_Os08g03450
Os.50728.1.S1_x_at--1086--7631Chr08:1613635..1613659 (25 bp)
GGGAGCTTAGCTCCTGTGATTCCTA
LOC_Os08g03450
Os.50728.1.S1_x_at--541--8071Chr08:1613636..1613660 (25 bp)
GGAGCTTAGCTCCTGTGATTCCTAT
LOC_Os08g03450
Target Sequence 
ACTGCAACAATATGATGGGAGCTTAGCTCCTGTGATTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50728.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis