Browse Element(s) Details


Os.38814.1.S1_at

Description gb:AK058280.1
DB_XREF= gi:32968298
TID=Os.38814.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.38814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C10, full insert sequence.
FL= gb:AK058280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g034509/1160S ribosomal protein L37, putative, expressed
LOC_Os02g021307/1160S ribosomal protein L37, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38814.1.S1_at--28--1991Chr02:633606..633630 (25 bp)
ACTCTCCAACCCTAGCCGAGAGGAG
NONE
Os.38814.1.S1_at--869--1671Chr02:633619..633643 (25 bp)
AGCCGAGAGGAGCAGACCAAGCAAT
NONE
Os.38814.1.S1_at--131--3332Chr08:1613040..1613064 (25 bp)
CAGCTTCGGCAAGCGCCGGAACAAG
LOC_Os08g03450
Os.38814.1.S1_at--621--7352Chr08:1614635..1614659 (25 bp)
GTGAAGGCCATTAGGCGCAAGACCA
LOC_Os08g03450
Os.38814.1.S1_at--1085--4432Chr08:1614641..1614665 (25 bp)
GCCATTAGGCGCAAGACCACAGGAA
LOC_Os08g03450
Os.38814.1.S1_at--323--5312Chr08:1614669..1614693 (25 bp)
GAAGGATGAGGTACATGCGACATGT
LOC_Os08g03450
Os.38814.1.S1_at--590--3532Chr08:1614682..1614706 (25 bp)
CATGCGACATGTGCCTAGGAGGTTC
LOC_Os08g03450
Os.38814.1.S1_at--803--4452Chr08:1614694..1614718 (25 bp)
GCCTAGGAGGTTCAAGAGCAACTTC
LOC_Os08g03450
Os.38814.1.S1_at--696--2052Chr08:1614714..1614845 (25 bp)
ACTTCAGAGAAGGTACTGAGGCTAC
LOC_Os08g03450
Os.38814.1.S1_at--850--5212Chr08:1614910..1614934 (25 bp)
GAATTTAAGAACTTTTGCCTGGATT
LOC_Os08g03450
Os.38814.1.S1_at--785--1152Chr08:1615014..1615038 (25 bp)
AGTCAGTTGAACCTCTCGTATTTTT
LOC_Os08g03450
Target Sequence 
ACTCTCCAACCCTAGCCGAGAGGAGCAGACCAAGCAATGGGGAAGGGTACGGGCAGCTTCGGCAAGCGCCGGAACAAGAC
GCACACGCTCTGCGTCCGCTGCGGCCGCCGCAGCTTCCACCTCCAGAAGAGCACCTGCTCCTCCTGCGGNTACCCCGCCG
CCCGCATCCGCAAGTACAACTGGAGCGTGAAGGCCATTAGGCGCAAGACCACAGGAACNGGAAGGATGAGGTACATGCGA
CATGTGCCTAGGAGGTTCAAGAGCAACTTCAGAGAAGGTACTGAGGCTACCCCAAGGAAGAGAGCTGCCGNNGCCAACTA
GATCCNGTTTTGCTNTNAAAGCAGCTATGAAACTAGAATTTAAGAACTTTTGCCTGGATTGNGCCATCTNTCCTATANTA
TGATGTACTNATCTNNTTTTATTTGTTANGNTGCTTNAAAACTTGACNTCTGAAATNTCAGTCAGTTGAACCTCTCGTAT
TTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis