Browse Element(s) Details


Os.52799.1.S1_at

Description gb:AK103896.1
DB_XREF= gi:32989105
TID=Os.52799.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150H12, full insert sequence.
FL= gb:AK103896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0342011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03370Os.53197.1.S1_at10/118+1571881..1573933Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52799.1.S1_at--878--6431Chr08:1598002..1598026 (25 bp)
GATCATGACCAGCTGTTGGGTGATT
LOC_Os08g03420
Os.52799.1.S1_at--538--8831Chr08:1598022..1598046 (25 bp)
TGATTACTGATGACACTCTCTGCTG
LOC_Os08g03420
Os.52799.1.S1_at--277--2011Chr08:1598036..1598060 (25 bp)
ACTCTCTGCTGGATGATTGTGACTC
LOC_Os08g03420
Os.52799.1.S1_at--910--7431Chr08:1598083..1598107 (25 bp)
GTGTAGCTTAAACTTTGCCGGCATT
LOC_Os08g03420
Os.52799.1.S1_at--146--2971Chr08:1598132..1598156 (25 bp)
AATGGCTAATCATCACCGCATGGAA
LOC_Os08g03420
Os.52799.1.S1_at--618--1791Chr08:1598146..1598170 (25 bp)
ACCGCATGGAACTGACTTGGTCTTA
LOC_Os08g03420
Os.52799.1.S1_at--339--10331Chr08:1598189..1598213 (25 bp)
TTTAATTAGGCCCAACTTCTCCGTG
LOC_Os08g03420
Os.52799.1.S1_at--105--1751Chr08:1598309..1598333 (25 bp)
ACCTCAAATCCATGCATGCCGATAT
LOC_Os08g03420
Os.52799.1.S1_at--1011--10591Chr08:1598339..1598363 (25 bp)
TTCTGAAAGCTCACATCATCGTATG
LOC_Os08g03420
Os.52799.1.S1_at--896--8291Chr08:1598483..1598507 (25 bp)
GGCTTCTAAGCTACATCATAATCAT
LOC_Os08g03420
Os.52799.1.S1_at--858--10471Chr08:1598523..1598547 (25 bp)
TTACTAATGAATTCCTGGTCTCCTG
LOC_Os08g03420
Target Sequence 
GATCATGACCAGCTGTTGGGTGATTACTGATGACACTCTCTGCTGGATGATTGTGACTCAGTCATTTCTTCTTCTTCCTT
TGTGTAGCTTAAACTTTGCCGGCATTGACAGGGGACCTGTCACAATTAACAATGGCTAATCATCACCGCATGGAACTGAC
TTGGTCTTATCGTCTTATTTAGTAGGATTTAATTAGGCCCAACTTCTCCGTGGACGCCCGGTCTGGCGGTGGCGGATGGG
CGGCCGGCGATGAGCTCGCCGTCGTTGTCGCCGCTGAGGCGAGCTGCTCGCCCGGTCACCGACTACCACCTCAAATCCAT
GCATGCCGATATATATTTTCTGAAAGCTCACATCATCGTATGATACTAAGTAGGGTCAAAAATTAAATTTGGTTCGAGTT
AAAAAATGTAGCTGTTCTTGTTACTGAAAATTAGATATCATAGAACTGTTGTGTTGTATATGAAAACTTTTTAGTAATCA
TGGCTTCTAAGCTACATCATAATCATGTAGCCTCATTATTTTTACTAATGAATTCCTGGTCTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis