Browse Element(s) Details


Os.19307.1.S1_at

Description gb:AK120428.1
DB_XREF= gi:37990051
TID=Os.19307.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095K19, full insert sequence.
FL= gb:AK120428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0343011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19307.1.S1_at--491--491Chr08:1602579..1602603 (25 bp)
ATCGTTGATCGGACATTCCTAAATA
LOC_Os08g03430
Os.19307.1.S1_at--436--7311Chr08:1602630..1602654 (25 bp)
GTGCTCTTCGTGCTTAGCAAGACCG
LOC_Os08g03430
Os.19307.1.S1_at--1106--1451Chr08:1602645..1602669 (25 bp)
AGCAAGACCGTTGTGGTTCCGGCCA
LOC_Os08g03430
Os.19307.1.S1_at--501--6691Chr08:1602660..1602684 (25 bp)
GTTCCGGCCAAAACATTAGTTCTTG
LOC_Os08g03430
Os.19307.1.S1_at--301--6731Chr08:1602678..1602702 (25 bp)
GTTCTTGATTACATCAGGTTTCCAT
LOC_Os08g03430
Os.19307.1.S1_at--1123--10231Chr08:1602734..1602758 (25 bp)
TTTGGTCCGGATCGCTAGATATGGT
LOC_Os08g03430
Os.19307.1.S1_at--149--1011Chr08:1602765..1602789 (25 bp)
AGGATACACATCAGGCTCCTATTGC
LOC_Os08g03430
Os.19307.1.S1_at--549--10211Chr08:1602784..1602808 (25 bp)
TATTGCCACCATGCCAGAATCCGAT
LOC_Os08g03430
Os.19307.1.S1_at--474--7811Chr08:1602876..1602900 (25 bp)
GGTCTCTCTTGAGGATTTCCTGATG
LOC_Os08g03430
Os.19307.1.S1_at--7--9851Chr08:1603039..1603063 (25 bp)
TAAATTGCTGTAGGCTTCTCCTGTC
LOC_Os08g03430
Os.19307.1.S1_at--538--3651Chr08:1603053..1603077 (25 bp)
CTTCTCCTGTCTTTTTTGTTGTGCA
LOC_Os08g03430
Target Sequence 
ATCGTTGATCGGACATTCCTAAATACAATTCTGATGCTCGAATTAACACNTGTGCTCTTCGTGCTTAGCAAGACCGTTGT
GGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCACATCTCAAACATCTGANTTTGG
TCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACA
GAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCTGA
TGAACACCCNTGTTTTGCCNGCTAATCCACNGTCATGCCAATTTTCCANTGAGAAACANGAGAGAACATCATGTAATTTT
GAACAGNTGATCANCTGAAACTCCACNTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGCTGTAG
GCTTCTCCTGTCTTTTTTGTTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis