Browse Element(s) Details


OsAffx.16808.1.S1_at

Description tigr:9636.m00263
TID=OsAffx.16808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0348011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16808.1.S1_at--198--5311Chr08:1626195..1626219 (25 bp)
GAAGGATCCGATCTTGTTCGACTCC
LOC_Os08g03480
OsAffx.16808.1.S1_at--547--551Chr08:1626200..1626224 (25 bp)
ATCCGATCTTGTTCGACTCCGGCAG
LOC_Os08g03480
OsAffx.16808.1.S1_at--958--8251Chr08:1626220..1626244 (25 bp)
GGCAGCGAGGACCTGTCCACCTGGG
LOC_Os08g03480
OsAffx.16808.1.S1_at--287--8391Chr08:1626298..1626322 (25 bp)
GGCGACTGCCTCAAGATCGAGTGCG
LOC_Os08g03480
OsAffx.16808.1.S1_at--46--1991Chr08:1626302..1626326 (25 bp)
ACTGCCTCAAGATCGAGTGCGCCGT
LOC_Os08g03480
OsAffx.16808.1.S1_at--688--9691Chr08:1626308..1626332 (25 bp)
TCAAGATCGAGTGCGCCGTCGACGT
LOC_Os08g03480
OsAffx.16808.1.S1_at--698--9071Chr08:1626491..1626515 (25 bp)
TGCTCAACAACACGACGTCGCAGGC
LOC_Os08g03480
OsAffx.16808.1.S1_at--416--5011Chr08:1626510..1626534 (25 bp)
GCAGGCGGCAACCATCACCATCGAC
LOC_Os08g03480
OsAffx.16808.1.S1_at--904--7571Chr08:1626676..1626700 (25 bp)
GGGCGGTACGGCATGGCGAGGCTGG
LOC_Os08g03480
OsAffx.16808.1.S1_at--1019--1651Chr08:1626713..1626737 (25 bp)
AGCGCGCCATGTGCAGGAGCCTCGA
LOC_Os08g03480
OsAffx.16808.1.S1_at--457--4151Chr08:1626715..1626739 (25 bp)
CGCGCCATGTGCAGGAGCCTCGACG
LOC_Os08g03480
Target Sequence 
GAAGGATCCGATCTTGTTCGACTCCGGCAGCGAGGACCTGTCCACCTGGGGCACCGGCGAGCTCGCCGCCAGGAGCTTCC
TCGACGGCTCGCCCTACGTCGCCGGCGACTGCCTCAAGATCGAGTGCGCCGTCGACGTCTGCCGCGACCGCCTCACGTTC
CACCACGACACGCCGCCCTCCGGCGAGCCGTTCCGCCAGTACCCCGCCGACGACGAGCCGGCCGACGTCACCTTCAAGAT
CGCCGGTGAGACCTTCCCCGCCCATGTCTCCGTGCTCGCCGCCCGTGCTCCCGGCCTGCTCAACAACACGACGTCGCAGG
CGGCAACCATCACCATCGACGACGACGACGACGACACGCCGGCGGCGGCGGCGGCATTCGGAGCGCTCCTCCACTTCGCC
TACACCGACACGCTCCCCGTGGCGAGCGGCCTCGACGGCGCCGGCCACACGGCGCTGCTGGGGCGCCTCCTCGTCGCGGC
GGGGCGGTACGGCATGGCGAGGCTGGGGGCGATCTGCGAGCGCGCCATGTGCAGGAGCCTCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis