Browse Element(s) Details


OsAffx.29015.1.S1_s_at

Description tigr:9636.m00271
TID=OsAffx.29015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0355011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29015.1.S1_s_at--814--3971Chr08:1646040..1646064 (25 bp)
CGGTCGCCAACGGCAATGGGACGAC
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--425--2671Chr08:1645951..1645975 (25 bp)
AAGCCCAAGTGCATCCAGTGCGGCA
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--953--2851Chr08:1645945..1645969 (25 bp)
AAGTGCATCCAGTGCGGCAACGTTG
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--359--1131Chr08:1645944..1645968 (25 bp)
AGTGCATCCAGTGCGGCAACGTTGC
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--1115--571Chr08:1645939..1645963 (25 bp)
ATCCAGTGCGGCAACGTTGCGCGCT
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--24--2591Chr08:1645793..1645951 (25 bp)
AACGTTGCGCGCTCGCGGTGCCCGT
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--629--3971Chr08:1645778..1645801 (24 bp)
CGGTGCCCGTTCCAGTGTTGTAAGA
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--188--7271Chr08:1645776..1645800 (25 bp)
GTGCCCGTTCCAGTGTTGTAAGAGC
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--600--9131Chr08:1645775..1645799 (25 bp)
TGCCCGTTCCAGTGTTGTAAGAGCT
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--524--6691Chr08:1645770..1645794 (25 bp)
GTTCCAGTGTTGTAAGAGCTGCTGC
LOC_Os08g03550
OsAffx.29015.1.S1_s_at--147--3471Chr08:1645766..1645790 (25 bp)
CAGTGTTGTAAGAGCTGCTGCTACA
LOC_Os08g03550
Target Sequence 
CGGTCGCCAACGGCAATGGGACGACGCCGCAGAAGCTGCCCCCGGCGTCCGCCTTCGACATGCCCAAGCCCAACCTGCGC
GGCCTCAACAAGCCCAAGTGCATCCAGTGCGGCAACGTTGCGCGCTCGCGGTGCCCGTTCCAGTGTTGTAAGAGCTGCTG
CTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29015.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis