Browse Element(s) Details


Os.12420.2.S1_x_at

Description gb:AK105083.1
DB_XREF= gi:32990292
TID=Os.12420.2
CNT=73
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pirin (OJ1484_G09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F02, full insert sequence.
FL= gb:AK105083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g035796/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein
LOC_Os08g03590NANA8+1671548..1673150hypothetical protein
LOC_Os08g03600OsAffx.29016.1.S1_at11/118+1675189..1677799magnesium transporter CorA, putative, expressed
LOC_Os08g03610Os.14929.1.S1_at10/118+1679908..1682459LSD1 zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12420.2.S1_x_at--862--1051NONE
AGGGTAGTACCCAATCACAAGCAGC
NONE
Os.12420.2.S1_x_at--406--6991NONE
GTACCCAATCACAAGCAGCCATGGT
NONE
Os.12420.2.S1_x_at--159--1691NONE
AGCCATGGTGACTCGCACCGCAAAC
NONE
Os.12420.2.S1_x_at--424--4111NONE
CGAAGAAACCCAGCACCAAGTGCGG
NONE
Os.12420.2.S1_x_at--4--2871NONE
AAGTGCGGAGAAACGCGCATCTCCT
NONE
Os.12420.2.S1_x_at--899--6791Chr08:1670256..1670280 (25 bp)
GTTTTACCAAGAGTTTTGCACCAAG
LOC_Os08g03579
Os.12420.2.S1_x_at--331--6071Chr08:1670266..1670290 (25 bp)
GAGTTTTGCACCAAGACATGTCGGT
LOC_Os08g03579
Os.12420.2.S1_x_at--863--10271Chr08:1670321..1670345 (25 bp)
TTTGCTGCTAATGTTTACCTACCGT
LOC_Os08g03579
Os.12420.2.S1_x_at--769--10151Chr08:1670335..1670359 (25 bp)
TTACCTACCGTTGAGTAATTGCTTT
LOC_Os08g03579
Os.12420.2.S1_x_at--850--6611Chr08:1670360..1670384 (25 bp)
GTTGGCTCTGTGGTAACATCTATTG
LOC_Os08g03579
Os.12420.2.S1_x_at--222--7511Chr08:1670369..1670393 (25 bp)
GTGGTAACATCTATTGATTGCTGCT
LOC_Os08g03579
Target Sequence 
AGGGTAGTACCCAATCACAAGCAGCCATGGTGACTCGCACCGCAAACCCCGAAGAAACCCAGCACCAAGTGCGGAGAAAC
GCGCATCTCCTCCCCACCACCGCTCCCCCAACGCGAGCCGCCGNNNNNANNTCCTCCCTTTCCCACCGCCGCCGCCGCCG
CCGAAAAAGAAGAAGAAGCCGACGAGGAGGCGACCATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGG
AAGCGCCGAAAGATGAGGCAGAGATCTAAGTAGGCGAAGGAGATGGGCGATCATGGTGATGGCGTGTCGCAGTGATCCAT
GTCTTCGGCTGCCAAGCTCGTTGATATGTCAAGCTGCTTGGCGTGGTGCCACCATTCGACTGTTGAATGGCTTATTTACC
TGTGCTGTTATCATCTTATATCCCTAGTTTTACCAAGAGTTTTGCACCAAGACATGTCGGTTCAGTTATGTGAACTTGTT
ATGGAGCCGTATTTGCTGCTAATGTTTACCTACCGTTGAGTAATTGCTTTNGTTGGCTCTGTGGTAACATCTATTGATTG
CTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12420.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis