Browse Element(s) Details


OsAffx.29016.1.S1_at

Description tigr:9636.m00276
TID=OsAffx.29016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0360011/11magnesium transporter CorA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein
LOC_Os08g03590NANA8+1671548..1673150hypothetical protein
LOC_Os08g03600OsAffx.29016.1.S1_at11/118+1675189..1677799magnesium transporter CorA, putative, expressed
LOC_Os08g03610Os.14929.1.S1_at10/118+1679908..1682459LSD1 zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29016.1.S1_at--1050--8031Chr08:1675922..1675946 (25 bp)
GGAGATTCCCCAAAATGCATCTTGA
LOC_Os08g03600
OsAffx.29016.1.S1_at--766--3011Chr08:1675909..1675933 (25 bp)
AATGCATCTTGATCTACAGCGCCTG
LOC_Os08g03600
OsAffx.29016.1.S1_at--818--4471Chr08:1675771..1675913 (25 bp)
GCCTGCTTCAGGTTGTTTCTCATGG
LOC_Os08g03600
OsAffx.29016.1.S1_at--782--5351Chr08:1675670..1675694 (25 bp)
GAAGATCTGATAGGCCGTCTTAGGA
LOC_Os08g03600
OsAffx.29016.1.S1_at--384--10831Chr08:1675535..1675559 (25 bp)
TTGTCCATAATATTCCTTCCTCTAT
LOC_Os08g03600
OsAffx.29016.1.S1_at--633--10671Chr08:1675520..1675543 (24 bp)
TTCCTCTATCCATTGTCACTGGAGT
LOC_Os08g03600
OsAffx.29016.1.S1_at--235--5131Chr08:1675365..1675389 (25 bp)
GCAAATCTAGATGGCTTCTTCAATG
LOC_Os08g03600
OsAffx.29016.1.S1_at--1034--10771Chr08:1675314..1675338 (25 bp)
TTGATCCTGCTGCTTTGTTTCTTAT
LOC_Os08g03600
OsAffx.29016.1.S1_at--643--4871Chr08:1675303..1675327 (25 bp)
GCTTTGTTTCTTATTTCCTTCATTG
LOC_Os08g03600
OsAffx.29016.1.S1_at--636--6871Chr08:1675279..1675303 (25 bp)
GTATTCACACGTGTCGGCATGGAGA
LOC_Os08g03600
OsAffx.29016.1.S1_at--435--8471Chr08:1675241..1675265 (25 bp)
TGGCCCGGAGCAGTTCTCAGAACAA
LOC_Os08g03600
Target Sequence 
GGAGATTCCCCAAAATGCATCTTGATCTACAGCGCCTGCTTCAGGTTGTTTCTCATGGTGACCAAGTATTCCCCCGTGTA
AAGGAAAAATGTGCGAGCAAGAGTTGGTTTGCGAGTGAAGATATTGTTGCTCTTGAAGATCTGATAGGCCGTCTTAGGAG
GCTGAAGGAAAATCTTGGATTTATAACGAATAGGGTGACTACACTTCAAGCTAGTCTAGATAGCTGGCAATCTGAGCAGA
TAAACAAAAGCTTGTACTATCTTTCATTTTTGTCCATAATATTCCTTCCTCTATCCATTGTCACTGGAGTTTTTGGGATG
AATGTTGGTGGTGTGCCATGGACTGAGCAGAAAAACCCTGCAAATCTAGATGGCTTCTTCAATGTCATGTTAATATGCGT
CGTGATCTTGTTGATCCTGCTGCTTTGTTTCTTATTTCCTTCATTGTATTCACACGTGTCGGCATGGAGAACCCGCCGTG
CACTGGCCCGGAGCAGTTCTCAGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis