Browse Element(s) Details


Os.14929.1.S1_at

Description gb:AK120454.1
DB_XREF= gi:37990077
TID=Os.14929.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104B05, full insert sequence.
FL= gb:AK120454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0361010/11LSD1 zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein
LOC_Os08g03590NANA8+1671548..1673150hypothetical protein
LOC_Os08g03600OsAffx.29016.1.S1_at11/118+1675189..1677799magnesium transporter CorA, putative, expressed
LOC_Os08g03610Os.14929.1.S1_at10/118+1679908..1682459LSD1 zinc finger family protein, expressed
LOC_Os08g03620OsAffx.16811.1.S1_at11/118+1703682..1708669TPR Domain containing protein
LOC_Os08g03620OsAffx.16811.2.S1_at2/118+1703682..1708669TPR Domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0008219biological_processcell death
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14929.1.S1_at--54--3451Chr08:1681700..1681724 (25 bp)
CAGATTGCACACCTGACATGCGGGC
LOC_Os08g03610
Os.14929.1.S1_at--139--5031Chr08:1681677..1681701 (25 bp)
GCAGTGCCGGACGACTCTGATGCAC
LOC_Os08g03610
Os.14929.1.S1_at--559--8091Chr08:1681646..1681670 (25 bp)
GGAGCCTCAACTGTGCAGTGTGCAA
LOC_Os08g03610
Os.14929.1.S1_at--417--7352Chr05:3364948..3364972 (25 bp)
GTGCAACCTGCAGATATGTTAACCA
NONE
Os.14929.1.S1_at--745--751NONE
ATGTCAGGGATGCTCGGCCTCAAAC
NONE
Os.14929.1.S1_at--320--3911Chr08:1680693..1680717 (25 bp)
CGGCCTCAAACTGTCCTTGTAGAGA
LOC_Os08g03610
Os.14929.1.S1_at--52--2991Chr08:1680210..1680234 (25 bp)
AATGTGGTTGTTGGTGTCACCTCAT
LOC_Os08g03610
Os.14929.1.S1_at--553--8311Chr08:1680166..1680190 (25 bp)
GGCTCATCTAGGGTTTAATCCCAAG
LOC_Os08g03610
Os.14929.1.S1_at--517--4431Chr08:1680000..1680024 (25 bp)
GCCATGTTTGTGCTTCTTTTGTGAG
LOC_Os08g03610
Os.14929.1.S1_at--987--8731Chr08:1679966..1679990 (25 bp)
TGTAAATATGCTGGCTATGGTGCTA
LOC_Os08g03610
Os.14929.1.S1_at--734--811Chr08:1679950..1679974 (25 bp)
ATGGTGCTAGCCTATGTGCTTTTTA
LOC_Os08g03610
Target Sequence 
CAGATTGCACACCTGACATGCGGGCAGTGCCGGACGACTCTGATGCACCCACCTGGAGCCTCAACTGTGCAGTGTGCAAC
CTGCAGATATGTTAACCATGTCAGGGATGCTCGGCCTCAAACTGTCCTTGTAGAGAATCCTAAGACACTGGATGATAAGG
GCAAGCTGGTGAGCAATGTGGTTGTTGGTGTCACCTCATGGAAAAGATGATGAACAGGGGCTCATCTAGGGTTTAATCCC
AAGGGTCTATGGATGATTGATACCCTTGGTGGATTTGTATCATTACTACNAAGCTATTGTTAAATCAAGTGTGTTTTGAA
GCTTGATATNNACANAGAGAAAAACNATAGGGCNAAAAATGAAGAAAAAAATATATCCGAAATGTGCCATGTTTGTGCTT
CTTTTGTGAGAAAAAAAANTGTAAATATGCTGGCTATGGTGCTAGCCTATGTGCTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis