Browse Element(s) Details


OsAffx.16811.2.S1_at

Description tigr:9631.m03928
TID=OsAffx.16811.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4084010/11hypothetical protein
LOC_Os08g036202/11TPR Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40800NANA3+22643748..22644934hypothetical protein
LOC_Os03g40820OsAffx.8789.1.S1_at2/113+22648735..22651324retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40830Os.54563.1.S1_at11/113+22657624..22660140cucumisin-like serine protease, putative, expressed
LOC_Os03g40840OsAffx.16811.2.S1_at10/113+22664724..22667796hypothetical protein
LOC_Os03g40860OsAffx.25460.1.S1_at11/113+22676530..22676787hypothetical protein
LOC_Os03g40870OsAffx.22722.1.S1_x_at1/113+22677622..22684053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40880OsAffx.20354.1.S1_at5/113+22685239..22687576retrotransposon protein, putative, unclassified
LOC_Os03g40900NANA3+22691305..22691808hypothetical protein
LOC_Os03g40910OsAffx.26001.2.S1_at1/113+22692358..22693179hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16811.2.S1_at--620--4112Chr08:1708152..1708398 (25 bp)
CGAAGCAGGCTCAGGATATCCTGGG
LOC_Os08g03620
OsAffx.16811.2.S1_at--106--10471Chr03:22666664..22666688 (25 bp)
TTACAAAAAGCGATGGGATTGGCAT
LOC_Os03g40840
OsAffx.16811.2.S1_at--326--7671Chr03:22666650..22666674 (25 bp)
GGGATTGGCATCGTTTTGGTGTGAA
LOC_Os03g40840
OsAffx.16811.2.S1_at--93--2711Chr03:22666627..22666651 (25 bp)
AAGCTTTTCTTGCTTATTAGCATTT
LOC_Os03g40840
OsAffx.16811.2.S1_at--957--9571Chr03:22666620..22666644 (25 bp)
TCTTGCTTATTAGCATTTTGCTTAG
LOC_Os03g40840
OsAffx.16811.2.S1_at--420--10391Chr03:22666605..22666629 (25 bp)
TTTTGCTTAGTTTCTGCTTTCTAGA
LOC_Os03g40840
OsAffx.16811.2.S1_at--68--6852Chr08:1708049..1708073 (25 bp)
GTTTCTGCTTTCTAGAACTCTGTAA
LOC_Os08g03620
OsAffx.16811.2.S1_at--55--5471Chr03:22666582..22666606 (25 bp)
GAACTCTGTAATCTGAACGTGTTTC
LOC_Os03g40840
OsAffx.16811.2.S1_at--732--3851NONE
CTGAACGTGTTTCCAGTGATTGAAA
NONE
OsAffx.16811.2.S1_at--718--2911Chr03:22665649..22665976 (25 bp)
AAGGATATGGCTACTAAATGCGACA
LOC_Os03g40840
OsAffx.16811.2.S1_at--1128--8471Chr03:22665642..22665969 (25 bp)
TGGCTACTAAATGCGACAGGACAAA
LOC_Os03g40840
Target Sequence 
CGAAGCAGGCTCAGGATATCCTGGGGCAAAAACTTTACAAAAAGCGATGGGATTGGCATCGTTTTGGTGTGAAGCTTTTC
TTGCTTATTAGCATTTTGCTTAGTTTCTGCTTTCTAGAACTCTGTAATCTGAACGTGTTTCCAGTGATTGAAAAGGACCC
AAACAAGGCAGTTCCATTGTTCTGGGCGGCTATAAACAGTGGTGATCGAATTGAGAGCGCACTGAAGGATATGGCTACTA
AATGCGACAGGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16811.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis