Browse Element(s) Details


Os.5729.1.S1_at

Description gb:AB099292.1
DB_XREF= gi:27529689
GEN=OsUEL-3
TID=Os.5729.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5729 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsUEL-3 mRNA for UDP-galactose 4-epimerase-like protein, complete cds.
PROD=UDP-galactose 4-epimerase-like protein
FL= gb:AK065715.1 gb:AB099292.1 gb:AK099222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0357011/11UDP-glucose 4-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein
LOC_Os08g03590NANA8+1671548..1673150hypothetical protein
LOC_Os08g03600OsAffx.29016.1.S1_at11/118+1675189..1677799magnesium transporter CorA, putative, expressed
LOC_Os08g03610Os.14929.1.S1_at10/118+1679908..1682459LSD1 zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0019567biological_processarabinose biosynthesis
GO:0005794cellular_componentGolgi apparatus
GO:0003824molecular_functioncatalytic activity
GO:0050373molecular_functionUDP-arabinose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5729.1.S1_at--512--9251Chr08:1664444..1664468 (25 bp)
TCCTAGACCTGAACTACGAGAGCAT
LOC_Os08g03570
Os.5729.1.S1_at--260--6351Chr08:1664493..1664517 (25 bp)
GATGCTGCGTTAGGAATCATTCCAG
LOC_Os08g03570
Os.5729.1.S1_at--420--8291Chr08:1664857..1664881 (25 bp)
GGCATTTACAATGTTGGCACTGGAA
LOC_Os08g03570
Os.5729.1.S1_at--150--2771Chr08:1665161..1665182 (22 bp)
AAGAGGTCGTTCAGTCAAGGAGTTT
LOC_Os08g03570
Os.5729.1.S1_at--577--3211Chr08:1665173..1665197 (25 bp)
CAAGGAGTTTGTGGATGCCTGCAAA
LOC_Os08g03570
Os.5729.1.S1_at--583--6451Chr08:1665281..1665305 (25 bp)
GATCAACACGGAGCTCAACTGGACT
LOC_Os08g03570
Os.5729.1.S1_at--577--8531Chr08:1665300..1665324 (25 bp)
TGGACTGCTCAATATACCGACCTCA
LOC_Os08g03570
Os.5729.1.S1_at--1020--1371Chr08:1665328..1665352 (25 bp)
AGAGCCTGTCAGTCGCTTGGAGATG
LOC_Os08g03570
Os.5729.1.S1_at--890--8211Chr08:1665352..1665376 (25 bp)
GGCAAAAGTCACATCCACGCGGATA
LOC_Os08g03570
Os.5729.1.S1_at--75--4931Chr08:1665395..1665419 (25 bp)
GCTTGCTGATCAATAATTCTGCTGA
LOC_Os08g03570
Os.5729.1.S1_at--889--7951Chr08:1665456..1665480 (25 bp)
GGATCTTGGTGCGATACCGCTTCCA
LOC_Os08g03570
Target Sequence 
TCCTAGACCTGAACTACGAGAGCATGGAAGGATATCCGGGGCATGCTTTGATGCTGCGTTAGGAATCATTCCAGGGCTGA
AGGTTAAAGGAACAGATTATCCTACAACTGATGGAACCTGCATAAGAGACTACATTGATGTCACAGATCTTGTTGATGCT
CATGTGAAAGCACTCAACAAGGCAGAGCCAAGTAAAGTTGGCATTTACAATGTTGGCACTGGAAGAGGTCGTTCAGTCAA
GGAGTTTGTGGATGCCTGCAAAAAGGCAACTGGAGTCAACATTAAAATTGAGTACCTCAGCAGGAGGCCAGGGGACTATG
CTGAAGTATACAGTGACCCAACAAAGATCAACACGGAGCTCAACTGGACTGCTCAATATACCGACCTCAAGGAGAGCCTG
TCAGTCGCTTGGAGATGGCAAAAGTCACATCCACGCGGATATGGGTCAAACTAAATATAGCTTGCTGATCAATAATTCTG
CTGAATCGTCGATATATTGATTTTTTTAGTTAGTGGTATAGGATCTTGGTGCGATACCGCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis