Browse Element(s) Details


Os.54054.1.S1_x_at

Description gb:AK101577.1
DB_XREF= gi:32986786
TID=Os.54054.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050L02, full insert sequence.
FL= gb:AK101577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0352011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54054.1.S1_x_at--610--2112Chr08:1639114..1639138 (25 bp)
ACATGGCCAGGGACTGCTCCCAGGG
LOC_Os08g03520
Os.54054.1.S1_x_at--458--6111Chr08:1638977..1639001 (25 bp)
GAGTGCCCCAGCAAGACCTACTAGG
LOC_Os08g03520
Os.54054.1.S1_x_at--1129--3731Chr08:1638896..1638920 (25 bp)
CTCACTGAATCACCGAGCAGCGGGT
LOC_Os08g03520
Os.54054.1.S1_x_at--549--5071Chr08:1638880..1638904 (25 bp)
GCAGCGGGTGATCAGTTCTATCTTA
LOC_Os08g03520
Os.54054.1.S1_x_at--401--9991Chr08:1638851..1638875 (25 bp)
TAGTCGTAGATCTCGTTAGGAAAGC
LOC_Os08g03520
Os.54054.1.S1_x_at--672--1551Chr08:1638829..1638853 (25 bp)
AGCTATGGATCTATCGGTTCGTCGT
LOC_Os08g03520
Os.54054.1.S1_x_at--922--4011Chr08:1638807..1638831 (25 bp)
CGTCGTCGTCGTTCTATGTAATGGG
LOC_Os08g03520
Os.54054.1.S1_x_at--810--8011Chr08:1638779..1638803 (25 bp)
GGAGTCTTGGAGTGGTTTAATCTTT
LOC_Os08g03520
Os.54054.1.S1_x_at--286--7191Chr08:1638742..1638766 (25 bp)
GTCGGTTTGAGAGACAAGCCATGGA
LOC_Os08g03520
Os.54054.1.S1_x_at--997--2651Chr08:1638727..1638751 (25 bp)
AAGCCATGGATTTGCACTGTCTGAT
LOC_Os08g03520
Os.54054.1.S1_x_at--695--9032Chr01:42931884..42932389 (25 bp)
TGCACTGTCTGATCTATCTATGAAT
NONE
Target Sequence 
ACATGGCCAGGGACTGCTCCCAGGGAGGAGGCGGCGGTGGTGGCTACGGTGGTGGTGGCGGCGGCTACCGCGGCGGTGGT
GGTGGCGGCGGCGGCGGCGGGTGCTACAACTGCGGCGAGACCGGCCACATCGCTCGCGAGTGCCCCAGCAAGACCTACTA
GGCGCTGCTCGCGGCGTCAGATCCAGCTCCCTCCCATGATGCGTTTTGCTCCCCCTCCCTCACTGAATCACCGAGCAGCG
GGTGATCAGTTCTATCTTATTAGTAGTCGTAGATCTCGTTAGGAAAGCTATGGATCTATCGGTTCGTCGTCGTCGTCGTT
CTATGTAATGGGATGGGAGTCTTGGAGTGGTTTAATCTTTTTGTTTCGTTGGGTCGGTTTGAGAGACAAGCCATGGATTT
GCACTGTCTGATCTATCTATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54054.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis