Browse Element(s) Details


OsAffx.29015.1.S1_at

Description tigr:9636.m00271
TID=OsAffx.29015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g035508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29015.1.S1_at--15--3631NONE
CTTGCCACATTCATGGGTTTAGGGA
NONE
OsAffx.29015.1.S1_at--978--10671NONE
TTGCCACATTCATGGGTTTAGGGAA
NONE
OsAffx.29015.1.S1_at--325--9211NONE
TGCCACATTCATGGGTTTAGGGAAG
NONE
OsAffx.29015.1.S1_at--223--2891Chr08:1645086..1645110 (25 bp)
AAGGGTGTAGAGAAGAATTTCAGTA
LOC_Os08g03550
OsAffx.29015.1.S1_at--517--2731Chr08:1645074..1645098 (25 bp)
AAGAATTTCAGTATGTTTGTCAGGT
LOC_Os08g03550
OsAffx.29015.1.S1_at--209--5231Chr08:1645072..1645096 (25 bp)
GAATTTCAGTATGTTTGTCAGGTTG
LOC_Os08g03550
OsAffx.29015.1.S1_at--362--191Chr08:1645070..1645094 (25 bp)
ATTTCAGTATGTTTGTCAGGTTGGA
LOC_Os08g03550
OsAffx.29015.1.S1_at--371--10531Chr08:1645068..1645092 (25 bp)
TTCAGTATGTTTGTCAGGTTGGATC
LOC_Os08g03550
OsAffx.29015.1.S1_at--296--9651Chr08:1645067..1645091 (25 bp)
TCAGTATGTTTGTCAGGTTGGATCA
LOC_Os08g03550
OsAffx.29015.1.S1_at--457--3451Chr08:1645066..1645090 (25 bp)
CAGTATGTTTGTCAGGTTGGATCAA
LOC_Os08g03550
OsAffx.29015.1.S1_at--76--6931Chr08:1645064..1645088 (25 bp)
GTATGTTTGTCAGGTTGGATCAAAC
LOC_Os08g03550
Target Sequence 
CTTGCCACATTCATGGGTTTAGGGAAGGAAATGAGGGAAAGGGTGTAGAGAAGAATTTCAGTATGTTTGTCAGGTTGGAT
CAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis