Browse Element(s) Details


OsAffx.16807.1.S1_at

Description tigr:9636.m00261
TID=OsAffx.16807.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0346010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16807.1.S1_at--940--6951Chr08:1620515..1620539 (25 bp)
GTAGCGGACTGGGTTCAGCTCAATC
LOC_Os08g03460
OsAffx.16807.1.S1_at--86--10531Chr08:1620502..1620526 (25 bp)
TTCAGCTCAATCTCTGGCATTGGGA
LOC_Os08g03460
OsAffx.16807.1.S1_at--394--7651Chr08:1620481..1620505 (25 bp)
GGGAGATGACCCAGACAATCAAAGA
LOC_Os08g03460
OsAffx.16807.1.S1_at--720--2271Chr08:1620448..1620472 (25 bp)
AAATGCTAGCCGCTTCGGCGGGCAT
LOC_Os08g03460
OsAffx.16807.1.S1_at--954--4271Chr08:1620402..1620426 (25 bp)
CCTGATCCTCCACATTGTTTGGGAA
LOC_Os08g03460
OsAffx.16807.1.S1_at--971--351NONE
ATAATCCTCCTTGTCCAATCTCGAG
NONE
OsAffx.16807.1.S1_at--928--5071Chr08:1619512..1619536 (25 bp)
GCACCTCGTGGCCTACTGGCTACTG
LOC_Os08g03460
OsAffx.16807.1.S1_at--308--8631Chr08:1619312..1619336 (25 bp)
TGGTGGCGCATCTGTTCGCCTTCGG
LOC_Os08g03460
OsAffx.16807.1.S1_at--489--9911Chr08:1619284..1619308 (25 bp)
TACGGCCTTCCGTATTGGGCTAGGC
LOC_Os08g03460
OsAffx.16807.1.S1_at--130--4031Chr08:1619274..1619298 (25 bp)
CGTATTGGGCTAGGCCTGAGCCTGA
LOC_Os08g03460
OsAffx.16807.1.S1_at--127--4271Chr08:1619245..1619269 (25 bp)
CCGGCCCTGCTGCATGTTAATGATT
LOC_Os08g03460
Target Sequence 
GTAGCGGACTGGGTTCAGCTCAATCTCTGGCATTGGGAGATGACCCAGACAATCAAAGATTGGTGGGAAATGCTAGCCGC
TTCGGCGGGCATCCCCAAGAAGGGGTTACGCACCCTGATCCTCCACATTGTTTGGGAAATATGGAATAATCCTCCTTGTC
CAATCTCGAGGGGGCAGCCGGGAGCCGGCGGCAGGCAACCGGCAGCGGCTGCACCAGCACCTCGTGGCCTACTGGCTACT
GCCGTCGCGCGGAGCAGCGGAAAACGGGAAGCCGTGAGCCGCGGAGTCGGCGCCGATGCGTGGCCTCTGGACCTGGGGAT
TGCACGCGATTTCGGCGCCGTGAGGAGGAGGAGATCAGAAGACGTGGGCGGCAGGCGGTGGCAATCGCGGCATGGCGCGT
GCGCCGGTGCGCGTTCTGGTGGCGCATCTGTTCGCCTTCGGGCCTACGGCCTTCCGTATTGGGCTAGGCCTGAGCCTGAG
GACCCGGCCCTGCTGCATGTTAATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis