Browse Element(s) Details


Os.54327.1.S1_at

Description gb:AK103383.1
DB_XREF= gi:32988592
TID=Os.54327.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127G06, full insert sequence.
FL= gb:AK103383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g034404/11Actin-like protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000902biological_processcellular morphogenesis
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009825biological_processmultidimensional cell growth
GO:0009845biological_processseed germination
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005885cellular_componentArp2/3 protein complex
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54327.1.S1_at--525--2531Chr08:1604209..1604233 (25 bp)
AACTAATGCCCGTCACCATGTGGAG
LOC_Os08g03440
Os.54327.1.S1_at--1084--8591Chr08:1604022..1604046 (25 bp)
TGGTCGCCCATCCTATACAGAGTTA
LOC_Os08g03440
Os.54327.1.S1_at--294--1191Chr08:1603976..1604000 (25 bp)
AGTAGCTGCTTCTAACCCTGAATTT
LOC_Os08g03440
Os.54327.1.S1_at--269--8091Chr08:1603709..1603733 (25 bp)
GGACCAGCACCGTTTTCAAAGGGAT
LOC_Os08g03440
Os.54327.1.S1_at--815--8991Chr08:1603680..1603704 (25 bp)
TGAATTTTTTCCACCTGTCCAAATC
NONE
Os.54327.1.S1_at--1028--10071Chr08:1603649..1603673 (25 bp)
TAGGAGTTCGTTTAGGTTTCACCAG
NONE
Os.54327.1.S1_at--464--3171Chr08:1603606..1603630 (25 bp)
AATTGATTCTTTTTGGCCCATCCAA
NONE
Os.54327.1.S1_at--588--1571Chr08:1603549..1603573 (25 bp)
AGCTCAGGTTGTTGTTAGCTCTCTC
NONE
Os.54327.1.S1_at--833--9511Chr08:1603530..1603554 (25 bp)
TCTCTCTGTGTTCATGCTGTGTATA
NONE
Os.54327.1.S1_at--167--9371Chr08:1603476..1603500 (25 bp)
TCGAGGTGCATGTTTGTAGCCAAAA
NONE
Os.54327.1.S1_at--243--2051Chr08:1603427..1603451 (25 bp)
ACTTTCTACATACTCCTATTTCACA
NONE
Target Sequence 
AACTAATGCCCGTCACCATGTGGAGGTGAAACCTGTTGAAGTCAATGTGGTCGCCCATCCTATACAGAGTTATGCAGCTT
GGTTCGGGGGTTCAGTAGCTGCTTCTAACCCTGAATTTTATGAGAGTTGCCACACAAAGGAAGAATACGAGGAGCATGGA
GCAAGCATCTGCCGGACCAGCACCGTTTTCAAAGGGATGTACTGAATTTTTTCCACCTGTCCAAATCTCTCAGTAGGAGT
TCGTTTAGGTTTCACCAGATAGAAATATGTAGTCAAAATTGATTCTTTTTGGCCCATCCAAAGCATCGCCGGGGCCATCC
TGATTAGATTGGTAGCTCAGGTTGTTGTTAGCTCTCTCTGTGTTCATGCTGTGTATAGCCAGCAGCTGCTGTTCCTCTGT
TTCTGTTCGAGGTGCATGTTTGTAGCCAAAACCTTGGGCAGCGAGGCCTTTTCCCACTTTCTACATACTCCTATTTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis