Browse Element(s) Details


Os.22819.1.S1_at

Description gb:AK060706.1
DB_XREF= gi:32970724
TID=Os.22819.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H02, full insert sequence.
FL= gb:AK060706.1 gb:AK073975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3706010/112-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g034301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein
LOC_Os08g37030OsAffx.17369.1.S1_at11/118+23275789..232767782-Hydroxyisoflavanone dehydratase, putative
LOC_Os08g37040Os.8320.1.S1_at11/118+23278717..23280057esterase, putative, expressed
LOC_Os08g37050OsAffx.17370.1.S1_at11/118+23284331..232852932-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37060Os.22819.1.S1_at10/118+23285897..232873602-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein
LOC_Os08g37080NANA8+23307846..23308678hypothetical protein
LOC_Os08g37090OsAffx.29568.1.S1_at11/118+23311300..23311809hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22819.1.S1_at--290--2231Chr08:23286933..23286957 (25 bp)
ACAAGGTCATCAGTGGCTTCCTCAA
LOC_Os08g37060
Os.22819.1.S1_at--587--6551Chr08:23287016..23287040 (25 bp)
GATTAGCATCGGTTCATACCCAGAA
LOC_Os08g37060
Os.22819.1.S1_at--16--1471Chr08:23287037..23287061 (25 bp)
AGAATAACTGCAGCTACGTCGCCGA
LOC_Os08g37060
Os.22819.1.S1_at--365--10473Chr08:23287085..23287109 (25 bp)
TTACTACTCCACTACTACATTTTAC
LOC_Os08g37060
Os.22819.1.S1_at--7--10531Chr08:23287118..23287142 (25 bp)
TTCAGGATTGTGTTGCATCTTTTGC
LOC_Os08g37060
Os.22819.1.S1_at--930--9311Chr08:23287168..23287192 (25 bp)
TCGCCATTGATTTAGGTGAGGGTAT
LOC_Os08g37060
Os.22819.1.S1_at--1120--3831Chr08:23287264..23287288 (25 bp)
CTGCTTTGTTTGACACATTGATTCA
LOC_Os08g37060
Os.22819.1.S1_at--283--6571Chr08:23287283..23287307 (25 bp)
GATTCATTTTCTTTGGAACTCCAGT
LOC_Os08g37060
Os.22819.1.S1_at--245--2551Chr08:23287299..23287323 (25 bp)
AACTCCAGTGAAAGCATTGTTCTTA
LOC_Os08g37060
Os.22819.1.S1_at--76--4951Chr08:23287312..23287336 (25 bp)
GCATTGTTCTTAACTCTTTGCATCA
LOC_Os08g37060
Os.22819.1.S1_at--928--5211NONE
GAATTACTTGCTTATACTCTTCAAA
NONE
Target Sequence 
ACAAGGTCATCAGTGGCTTCCTCAACCGTTGACTCGCCGTCGCCGGCGATGACACCGTCGTCGTCGGAATCGGAGATTAC
CAAGATTAGCATCGGTTCATACCCAGAATAACTGCAGCTACGTCGCCGACGGATGCCGCTGCCGCGCCATACTTACTACT
CCACTACTACATTTTACATTTTGGATTCAGGATTGTGTTGCATCTTTTGCAATTGGGTGTATGGATGGAAGGAAATCGCC
ATTGATTTAGGTGAGGGTATTGTNGTATCAGGAAGTTGGGGGAGATAAATGATAATACTACAGTCATAGACTTCATACAG
ATGAAATTATNCTGCTTTGTTTGACACATTGATTCATTTTCTTTGGAACTCCAGTGAAAGCATTGTTCTTAACTCTTTGC
ATCAAAGAATTACTTGCTTATACTCTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis