Browse Element(s) Details


OsAffx.17370.1.S1_at

Description tigr:9636.m03721
TID=OsAffx.17370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3705011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein
LOC_Os08g37030OsAffx.17369.1.S1_at11/118+23275789..232767782-Hydroxyisoflavanone dehydratase, putative
LOC_Os08g37040Os.8320.1.S1_at11/118+23278717..23280057esterase, putative, expressed
LOC_Os08g37050OsAffx.17370.1.S1_at11/118+23284331..232852932-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37060Os.22819.1.S1_at10/118+23285897..232873602-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein
LOC_Os08g37080NANA8+23307846..23308678hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17370.1.S1_at--182--5791Chr08:23284709..23284733 (25 bp)
GACGACGCGTGGTCCGCGCTGCAGT
LOC_Os08g37050
OsAffx.17370.1.S1_at--335--8331Chr08:23284764..23284788 (25 bp)
GGCTCCGCGACCACGGCGACAGGGA
LOC_Os08g37050
OsAffx.17370.1.S1_at--466--4651Chr08:23284791..23284815 (25 bp)
GCGTCTTCGTGCTCGGGTACAGCTC
LOC_Os08g37050
OsAffx.17370.1.S1_at--867--3831Chr08:23284898..23284922 (25 bp)
CTGCTGCACCCGTACTTCATGGCGG
LOC_Os08g37050
OsAffx.17370.1.S1_at--1141--1771Chr08:23284905..23284929 (25 bp)
ACCCGTACTTCATGGCGGCCAAGAA
LOC_Os08g37050
OsAffx.17370.1.S1_at--871--6251Chr08:23284978..23285002 (25 bp)
GATGTGGGCGTTGGCGTGCGGCGGC
LOC_Os08g37050
OsAffx.17370.1.S1_at--1077--1831Chr08:23285142..23285166 (25 bp)
ACGACGGGTTGCTGGAGAGCGGGTG
LOC_Os08g37050
OsAffx.17370.1.S1_at--1147--1591Chr08:23285184..23285208 (25 bp)
AGCTGCTTGTCTCCGGCGAGGATCA
LOC_Os08g37050
OsAffx.17370.1.S1_at--1054--8371Chr08:23285198..23285222 (25 bp)
GGCGAGGATCACGAGTACGTCCACC
LOC_Os08g37050
OsAffx.17370.1.S1_at--96--6171Chr08:23285201..23285225 (25 bp)
GAGGATCACGAGTACGTCCACCGCG
LOC_Os08g37050
OsAffx.17370.1.S1_at--300--4231Chr08:23285229..23285253 (25 bp)
CCGACAGCGCCAAGGCCGTGGTTGT
LOC_Os08g37050
Target Sequence 
GACGACGCGTGGTCCGCGCTGCAGTGGGCCGTCGCCGCCGCGAGCGCCGACCCGTGGCTCCGCGACCACGGCGACAGGGA
GCGCGTCTTCGTGCTCGGGTACAGCTCCGGCGGCAACATCGCCCACAACGTCACCCTCCGCGCCGGGGCCGAGGAGCTCC
CCGGCGGCGCGAGCGTCAAGGGGATGGCGCTGCTGCACCCGTACTTCATGGCGGCCAAGAAGGCCGACGGCGAGGTGAAG
AACGCGTGGCTGAGGGGCAAGCTGGAGGAGATGTGGGCGTTGGCGTGCGGCGGCGGCCGGACCACGGCGGGGCTGGACGA
CCCGCGGATCAACCCGGTGGCCGACGGCGCGCCGAGCCTGCGCCGGCTCGGCTGCGACCGCGTCCTGGTCTGCCTCGCCG
ACGACGAGCTGGAGGTCCGGGGCAAGGCGTACTACGACGGGTTGCTGGAGAGCGGGTGGGCAGAGGACGCCGCCGAGCTG
CTTGTCTCCGGCGAGGATCACGAGTACGTCCACCGCGATCCCGACAGCGCCAAGGCCGTGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis