Browse Element(s) Details


Os.8320.1.S1_at

Description gb:AK105839.1
DB_XREF= gi:32991048
TID=Os.8320.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F05, full insert sequence.
FL= gb:AK105839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3704011/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36980Os.24652.1.S1_at11/118+23254066..23255878DnaJ domain containing protein, expressed
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein
LOC_Os08g37030OsAffx.17369.1.S1_at11/118+23275789..232767782-Hydroxyisoflavanone dehydratase, putative
LOC_Os08g37040Os.8320.1.S1_at11/118+23278717..23280057esterase, putative, expressed
LOC_Os08g37050OsAffx.17370.1.S1_at11/118+23284331..232852932-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37060Os.22819.1.S1_at10/118+23285897..232873602-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8320.1.S1_at--682--8071Chr08:23279243..23279267 (25 bp)
GGAGCACCCGTACGTGAACCCGATG
LOC_Os08g37040
Os.8320.1.S1_at--108--6111Chr08:23279032..23279056 (25 bp)
GAGTCGCCCAAGGAAGCCATGCATA
LOC_Os08g37040
Os.8320.1.S1_at--1005--10531Chr08:23278990..23279014 (25 bp)
TTCATTAACCGCGACACCTAGCAAG
LOC_Os08g37040
Os.8320.1.S1_at--1064--10011Chr08:23278972..23278996 (25 bp)
TAGCAAGCACATCACTAGCAGCAGC
LOC_Os08g37040
Os.8320.1.S1_at--598--8851Chr08:23278938..23278962 (25 bp)
TGATCCATCTTCAACGTGGCAGCTC
LOC_Os08g37040
Os.8320.1.S1_at--625--1571Chr08:23278918..23278942 (25 bp)
AGCTCAGCTACACACCCGAGTAAAG
LOC_Os08g37040
Os.8320.1.S1_at--495--6091Chr08:23278881..23278905 (25 bp)
GAGTACTCCTAGTAACCACATATAG
LOC_Os08g37040
Os.8320.1.S1_at--205--10311Chr08:23278834..23278858 (25 bp)
TTTCTGTCTTTCTTCATCGAGGCAG
LOC_Os08g37040
Os.8320.1.S1_at--73--6391Chr08:23278810..23278834 (25 bp)
GATCGACATCCGTACGTGTGAGTGT
LOC_Os08g37040
Os.8320.1.S1_at--491--7391Chr08:23278793..23278817 (25 bp)
GTGAGTGTGATTTCAGTGTTTCGAC
LOC_Os08g37040
Os.8320.1.S1_at--738--9311Chr08:23278747..23278771 (25 bp)
TCGTTACGTACCTCCGTGAAACTTG
LOC_Os08g37040
Target Sequence 
GGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGG
TGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCG
CGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGC
CACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTNTGAATTNTGATCCATCTTCAAC
GTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTAC
TACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGA
ATTGCANANGNNCNNTTCGTTACGTACCTCCGTGAAACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis