Browse Element(s) Details


OsAffx.4334.1.S1_at

Description tigr:9633.m01265
TID=OsAffx.4334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g144709/11hypothetical protein
LOC_Os11g391501/11hypothetical protein
LOC_Os08g369941/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14450NANA5+8139946..8143251transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14460Os.47463.1.S1_x_at6/115+8146246..8149946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14460Os.14491.2.S1_x_at5/115+8146246..8149946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14470OsAffx.4334.1.S1_at9/115+8152879..8154366hypothetical protein
LOC_Os05g14480OsAffx.26881.1.S1_at10/115+8155818..8157927hypothetical protein
LOC_Os05g14490OsAffx.26882.1.S1_at9/115+8160563..8163319hypothetical protein
LOC_Os05g14500OsAffx.15781.5.S1_x_at9/115+8175033..8177652hAT family dimerisation domain containing protein
LOC_Os05g14500OsAffx.15781.4.S1_x_at9/115+8175033..8177652hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4334.1.S1_at--306--5112Chr05:8152928..8152952 (25 bp)
GCACTCCGCGGTGGGCGTGGACAGA
LOC_Os05g14470
OsAffx.4334.1.S1_at--303--2952Chr05:8153015..8153038 (24 bp)
AAGGCGATGGAGACAGCTACGAAGA
LOC_Os05g14470
OsAffx.4334.1.S1_at--293--1411NONE
AGACAGCTACGAAGAGGTTGATCCA
NONE
OsAffx.4334.1.S1_at--1152--10772Chr05:8153580..8153604 (25 bp)
TTGATCCAACTCTTGATCTGAGCCG
LOC_Os05g14470
OsAffx.4334.1.S1_at--218--3271Chr05:8153586..8153610 (25 bp)
CAACTCTTGATCTGAGCCGTTGGAT
LOC_Os05g14470
OsAffx.4334.1.S1_at--367--8858Chr08:23265516..23265536 (21 bp)
TGAGCCGTTGGATGAATAGATCTAA
LOC_Os08g36994
OsAffx.4334.1.S1_at--1054--3891NONE
CTGGGTTTGATGAACTGGATCGGAT
NONE
OsAffx.4334.1.S1_at--712--6432Chr05:8164840..8164864 (25 bp)
GATCATGCTGTCTTGGATTGTTACC
NONE
OsAffx.4334.1.S1_at--783--612Chr05:8164844..8164868 (25 bp)
ATGCTGTCTTGGATTGTTACCCCAT
NONE
OsAffx.4334.1.S1_at--148--8792Chr05:8164858..8164882 (25 bp)
TGTTACCCCATCCACATCAATTGAT
NONE
OsAffx.4334.1.S1_at--79--372Chr05:8164873..8164897 (25 bp)
ATCAATTGATCCTACGCAATGGGAA
NONE
Target Sequence 
GCACTCCGCGGTGGGCGTGGACAGAGGCGTGGCCCGCCGGATCGAAGGCGACGACGGCGAACTGGGGAAGCAGGATCAGC
AGCGGCGAAGGCGATGGAGACAGCTACGAAGAGGTTGATCCAACTCTTGATCTGAGCCGTTGGATGAATAGATCTAAGAG
TCAGAAAATATCTGGGTTTGATGAACTGGATCGGATCATGCTGTCTTGGATTGTTACCCCATCCACATCAATTGATCCTA
CGCAATGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis