Browse Element(s) Details


OsAffx.26882.1.S1_at

Description tigr:9633.m01267
TID=OsAffx.26882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g144909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14450NANA5+8139946..8143251transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14460Os.47463.1.S1_x_at6/115+8146246..8149946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14460Os.14491.2.S1_x_at5/115+8146246..8149946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g14470OsAffx.4334.1.S1_at9/115+8152879..8154366hypothetical protein
LOC_Os05g14480OsAffx.26881.1.S1_at10/115+8155818..8157927hypothetical protein
LOC_Os05g14490OsAffx.26882.1.S1_at9/115+8160563..8163319hypothetical protein
LOC_Os05g14500OsAffx.15781.5.S1_x_at9/115+8175033..8177652hAT family dimerisation domain containing protein
LOC_Os05g14500OsAffx.15781.4.S1_x_at9/115+8175033..8177652hAT family dimerisation domain containing protein
LOC_Os05g14510NANA5+8184477..8191767retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26882.1.S1_at--375--5991NONE
GAGACTAGTGATGAAAACGCATTCT
NONE
OsAffx.26882.1.S1_at--1077--5511NONE
GAAAACGCATTCTACCTCTATGTTC
NONE
OsAffx.26882.1.S1_at--672--111Chr05:8161164..8161188 (25 bp)
ATTCTACCTCTATGTTCCGTGTACA
LOC_Os05g14490
OsAffx.26882.1.S1_at--641--3752Chr06:11588527..11588551 (25 bp)
CTCTATGTTCCGTGTACATTTTGAT
NONE
OsAffx.26882.1.S1_at--537--3591Chr05:8161141..8161165 (25 bp)
CATTTTGATTTGACTACCTGTGTGG
LOC_Os05g14490
OsAffx.26882.1.S1_at--758--6151Chr05:8160655..8161138 (25 bp)
GAGGTCAAGCAACTACAAGGGCCAT
LOC_Os05g14490
OsAffx.26882.1.S1_at--35--2232Chr06:11588017..11588040 (24 bp)
ACAAGGGCCATCAGCATTTGGTCTC
NONE
OsAffx.26882.1.S1_at--855--8432Chr06:11588012..11588036 (25 bp)
GGCCATCAGCATTTGGTCTCATGAA
NONE
OsAffx.26882.1.S1_at--896--3573Chr12:19044633..19044655 (23 bp)
CATTTGGTCTCATGAAGCTCACTCA
NONE
OsAffx.26882.1.S1_at--1103--1572Chr06:11587993..11588012 (20 bp)
AGCTCACTCATGGAGCCATGTATGG
NONE
OsAffx.26882.1.S1_at--469--4432Chr06:11587973..11587998 (25 bp)
GCCATGTATGGATTGACATCTGTTT
NONE
Target Sequence 
GAGACTAGTGATGAAAACGCATTCTACCTCTATGTTCCGTGTACATTTTGATTTGACTACCTGTGTGGGGGAGGTCAAGC
AACTACAAGGGCCATCAGCATTTGGTCTCATGAAGCTCACTCATGGAGCCATGTATGGATTGACATCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis