Browse Element(s) Details


OsAffx.29568.1.S1_at

Description tigr:9636.m03725
TID=OsAffx.29568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3709011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37060Os.22819.1.S1_at10/118+23285897..232873602-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein
LOC_Os08g37080NANA8+23307846..23308678hypothetical protein
LOC_Os08g37090OsAffx.29568.1.S1_at11/118+23311300..23311809hypothetical protein
LOC_Os08g37104Os.31832.1.S1_at11/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_x_at10/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_at10/118+23315214..23319987expressed protein
LOC_Os08g37104Os.18383.1.A1_x_at7/118+23315214..23319987expressed protein
LOC_Os08g37120OsAffx.12861.3.S1_x_at10/118+23327503..23330255hypothetical protein
LOC_Os08g37120OsAffx.12861.2.S1_x_at9/118+23327503..23330255hypothetical protein
LOC_Os08g37130Os.7631.1.S1_at11/118+23331091..23335550oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os08g37140OsAffx.17373.1.S1_at11/118+23335901..23339725phosphoglycerate mutase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29568.1.S1_at--813--1691Chr08:23311754..23311778 (25 bp)
AGCCAGGTCAGCGAGTTGGCGGCGT
LOC_Os08g37090
OsAffx.29568.1.S1_at--283--7551Chr08:23311727..23311751 (25 bp)
GTGGCGTGGAGTTGGCGGCATTGGC
LOC_Os08g37090
OsAffx.29568.1.S1_at--952--11Chr08:23311708..23311732 (25 bp)
ATTGGCAGATAGAGTTGGCGGCCTC
LOC_Os08g37090
OsAffx.29568.1.S1_at--555--5171Chr08:23311653..23311677 (25 bp)
GCAAGCACGATAGCGTCGGAGGCAT
LOC_Os08g37090
OsAffx.29568.1.S1_at--66--9971Chr08:23311643..23311667 (25 bp)
TAGCGTCGGAGGCATGGGTGGCCGC
LOC_Os08g37090
OsAffx.29568.1.S1_at--808--831Chr08:23311611..23311635 (25 bp)
ATGGAGGCGCGACTGTTGTGGCCGC
LOC_Os08g37090
OsAffx.29568.1.S1_at--701--7291Chr08:23311545..23311569 (25 bp)
GTGCGAGCGGGCCAGCGAGTGGACG
LOC_Os08g37090
OsAffx.29568.1.S1_at--960--6111Chr08:23311529..23311553 (25 bp)
GAGTGGACGTCGGTGGCAGGCGTCG
LOC_Os08g37090
OsAffx.29568.1.S1_at--1053--4771Chr08:23311501..23311525 (25 bp)
GCTGCGGATCCGAAGGAAGCTGCAA
LOC_Os08g37090
OsAffx.29568.1.S1_at--648--871Chr08:23311467..23311491 (25 bp)
ATGGCGCGCTCGCAGCGGCCTTCTT
LOC_Os08g37090
OsAffx.29568.1.S1_at--739--9351Chr08:23311458..23311482 (25 bp)
TCGCAGCGGCCTTCTTCACGATGGC
LOC_Os08g37090
Target Sequence 
AGCCAGGTCAGCGAGTTGGCGGCGTCGGTGGCGTGGAGTTGGCGGCATTGGCAGATAGAGTTGGCGGCCTCGGCGGTGTG
GAGGTGGCGGCGGGGGCGGCGGCAAGCACGATAGCGTCGGAGGCATGGGTGGCCGCGGCAGGCATGGAGGCGCGACTGTT
GTGGCCGCCGGCGGGCTGTGGCAGGCCGGCGGCTCGAGGCGGGTCGCCGGTGCGAGCGGGCCAGCGAGTGGACGTCGGTG
GCAGGCGTCGGAGGCTGCGGATCCGAAGGAAGCTGCAAAGGTGGAGGATGGCGCGCTCGCAGCGGCCTTCTTCACGATGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis