Browse Element(s) Details


OsAffx.17373.1.S1_at

Description tigr:9636.m03729
TID=OsAffx.17373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoglycerate mutase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3714011/11phosphoglycerate mutase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37090OsAffx.29568.1.S1_at11/118+23311300..23311809hypothetical protein
LOC_Os08g37104Os.31832.1.S1_at11/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_x_at10/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_at10/118+23315214..23319987expressed protein
LOC_Os08g37104Os.18383.1.A1_x_at7/118+23315214..23319987expressed protein
LOC_Os08g37120OsAffx.12861.3.S1_x_at10/118+23327503..23330255hypothetical protein
LOC_Os08g37120OsAffx.12861.2.S1_x_at9/118+23327503..23330255hypothetical protein
LOC_Os08g37130Os.7631.1.S1_at11/118+23331091..23335550oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os08g37140OsAffx.17373.1.S1_at11/118+23335901..23339725phosphoglycerate mutase family protein, expressed
LOC_Os08g37150Os.50419.1.S1_x_at4/118+23342499..23343393uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g37160OsAffx.6054.1.S1_at11/118+23345226..23347866Zinc knuckle family protein
LOC_Os08g37170Os.56188.1.S1_at1/118+23348398..23351511retrotransposon protein, putative, unclassified
LOC_Os08g37180Os.54033.1.S1_at11/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37180OsAffx.17216.1.S1_x_at1/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37180OsAffx.661.1.S1_x_at1/118+23359050..23361689Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17373.1.S1_at--1014--1631Chr08:23336759..23336783 (25 bp)
AGCGATGTGTCTCTTGCTTGTACAA
LOC_Os08g37140
OsAffx.17373.1.S1_at--98--5231Chr08:23336393..23336417 (25 bp)
GAATAATCTTGGTCTCGCACGGTGG
LOC_Os08g37140
OsAffx.17373.1.S1_at--298--7171Chr08:23336382..23336406 (25 bp)
GTCTCGCACGGTGGAACCATCAGAG
LOC_Os08g37140
OsAffx.17373.1.S1_at--139--4991Chr08:23336347..23336371 (25 bp)
GCATGCCAGTCCAATGAAGCCTCTT
LOC_Os08g37140
OsAffx.17373.1.S1_at--927--5411Chr08:23336332..23336356 (25 bp)
GAAGCCTCTTCACGGTAAGATACAC
LOC_Os08g37140
OsAffx.17373.1.S1_at--127--6471Chr08:23336314..23336338 (25 bp)
GATACACAACACATCCGTAAGCGTA
LOC_Os08g37140
OsAffx.17373.1.S1_at--1082--2671Chr08:23336296..23336320 (25 bp)
AAGCGTAATCCTTGTGTCTGGTGCC
LOC_Os08g37140
OsAffx.17373.1.S1_at--773--7271Chr08:23336276..23336300 (25 bp)
GTGCCACTGGGCGTTGCATTGTCAA
LOC_Os08g37140
OsAffx.17373.1.S1_at--245--7631Chr08:23336243..23336267 (25 bp)
GGGACATCAGCCACCTTAAGGAAAC
LOC_Os08g37140
OsAffx.17373.1.S1_at--554--10251Chr08:23336199..23336223 (25 bp)
TTTGGTGGCGATAAGAACTCTGCAT
LOC_Os08g37140
OsAffx.17373.1.S1_at--202--9831Chr08:23336175..23336199 (25 bp)
TAAACCCAGCTTCAGTAGCGTCGTA
LOC_Os08g37140
Target Sequence 
AGCGATGTGTCTCTTGCTTGTACAACATAGTCGAGAAACATCAAGGGGAGCGAATAATCTTGGTCTCGCACGGTGGAACC
ATCAGAGAACTCTACAGGCATGCCAGTCCAATGAAGCCTCTTCACGGTAAGATACACAACACATCCGTAAGCGTAATCCT
TGTGTCTGGTGCCACTGGGCGTTGCATTGTCAAGGCGTGCGGGGACATCAGCCACCTTAAGGAAACCGGTGTTCTGGAAA
ACGCCTTTGGTGGCGATAAGAACTCTGCATAAACCCAGCTTCAGTAGCGTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis