Browse Element(s) Details


Os.18383.1.A1_x_at

Description gb:AK066585.1
DB_XREF= gi:32976603
TID=Os.18383.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074F07, full insert sequence.
FL= gb:AK066585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g371047/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein
LOC_Os08g37080NANA8+23307846..23308678hypothetical protein
LOC_Os08g37090OsAffx.29568.1.S1_at11/118+23311300..23311809hypothetical protein
LOC_Os08g37104Os.31832.1.S1_at11/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_x_at10/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_at10/118+23315214..23319987expressed protein
LOC_Os08g37104Os.18383.1.A1_x_at7/118+23315214..23319987expressed protein
LOC_Os08g37120OsAffx.12861.3.S1_x_at10/118+23327503..23330255hypothetical protein
LOC_Os08g37120OsAffx.12861.2.S1_x_at9/118+23327503..23330255hypothetical protein
LOC_Os08g37130Os.7631.1.S1_at11/118+23331091..23335550oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os08g37140OsAffx.17373.1.S1_at11/118+23335901..23339725phosphoglycerate mutase family protein, expressed
LOC_Os08g37150Os.50419.1.S1_x_at4/118+23342499..23343393uncharacterized plant-specific domain TIGR01570 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18383.1.A1_x_at--631--6811Chr08:23318851..23318875 (25 bp)
GTTTTTGGACTGGACTGGCCTGAGC
LOC_Os08g37104
Os.18383.1.A1_x_at--359--8911Chr08:23318871..23318895 (25 bp)
TGAGCCGTCGGTGACATTCGCGCTG
LOC_Os08g37104
Os.18383.1.A1_x_at--977--2171Chr08:23319695..23319719 (25 bp)
ACACGGCTTGCCACGTCGAGGAAGA
LOC_Os08g37104
Os.18383.1.A1_x_at--381--7851Chr08:23319806..23319830 (25 bp)
GGTACCTTCTTGACTTCACCAAGGA
LOC_Os08g37104
Os.18383.1.A1_x_at--606--9632Chr09:17536525..17537016 (25 bp)
TCATGGACTGGGTGTGCCTGCAGCT
NONE
Os.18383.1.A1_x_at--987--10131Chr08:23319936..23319960 (25 bp)
TATCCAGGTTGTGCCGTACGAGTTC
LOC_Os08g37104
Os.18383.1.A1_x_at--1000--9631Chr08:23319959..23319983 (25 bp)
TCAGGTTCAGGTATCTTCTGGCCAC
LOC_Os08g37104
Os.18383.1.A1_x_at--376--8451Chr08:23319978..23320002 (25 bp)
GGCCACGTAGACCTGCCACGGTGTA
NONE
Os.18383.1.A1_x_at--207--9191Chr08:23319991..23320015 (25 bp)
TGCCACGGTGTATGGATTGGACACT
NONE
Os.18383.1.A1_x_at--631--1391Chr08:23320018..23320042 (25 bp)
AGAAGGGCAGAATGGCTTGTTTTTT
NONE
Os.18383.1.A1_x_at--951--231Chr08:23320127..23320151 (25 bp)
ATATATATCATGTTGCTTTCCACTG
NONE
Target Sequence 
GTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTGGTCTTCGCCGGCGGTGAGGGT
GTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGCCAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGG
CGACCAGCATCTCGATCCCCAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTGG
GTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAGCCGCCGGAGCCCGTCGCCGCC
GCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTATCTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGAC
ACTGTAGAAGGGCAGAATGGCTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCATT
TGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTGCTTTCCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18383.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis