Browse Element(s) Details


OsAffx.12861.2.S1_x_at

Description tigr:9634.m01047
TID=OsAffx.12861.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1214011/11hAT family dimerisation domain containing protein
LOC_Os06g1074011/11hAT family dimerisation domain containing protein
LOC_Os03g1460011/11hAT family dimerisation domain containing protein
LOC_Os08g371209/11hypothetical protein
LOC_Os11g182201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12110NANA10+6490392..6493312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12120OsAffx.18237.1.S1_at11/1110+6495066..6496856glucosyltransferase, putative
LOC_Os10g12130OsAffx.8801.1.S1_at3/1110+6497821..6505115expressed protein
LOC_Os10g12140OsAffx.12861.2.S1_x_at11/1110+6514664..6519216hAT family dimerisation domain containing protein
LOC_Os10g12140OsAffx.12861.3.S1_x_at9/1110+6514664..6519216hAT family dimerisation domain containing protein
LOC_Os10g12149Os.51348.1.S1_x_at2/1110+6525006..6525746hypothetical protein
LOC_Os10g12160Os.45173.5.S1_x_at4/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12160Os.45173.1.S1_x_at1/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12861.2.S1_x_at--731--1634Chr10:6518402..6518426 (25 bp)
AGCGTGTCTTGGCTGCTATCGATAA
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--923--10354Chr10:6518429..6518453 (25 bp)
TTTTCCGGGCTTACAAGAGTTGTGT
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--591--5554Chr10:6518466..6518490 (25 bp)
GAAACCTACCGCTGCAGGATCAAGT
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--214--8974Chr10:6518490..6518514 (25 bp)
TGAAAATTCTCAGCCACATGGTAAT
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--192--3514Chr10:6518506..6518530 (25 bp)
CATGGTAATACTTCTTTGGGTCACA
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--606--3334Chr10:6518711..6518735 (25 bp)
CACTCGCGCGTGATGTAATGGCTGT
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--1146--2953Chr10:6518727..6518751 (25 bp)
AATGGCTGTTCAAATCTCTACCGTT
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--229--9974Chr10:6518745..6518769 (25 bp)
TACCGTTGCTTCAGAGTCAGCGTTT
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--731--7414Chr10:6518783..6518807 (25 bp)
GTGTTGTTGGTCCTTTTCGCAGTTC
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--651--10633Chr10:6518798..6518822 (25 bp)
TTCGCAGTTCTCTACATCCTGAGAT
LOC_Os10g12140
OsAffx.12861.2.S1_x_at--264--6215Chr10:6518827..6518851 (25 bp)
GAGGCTCTAGTTTGTACCAAGGATT
LOC_Os10g12140
Target Sequence 
AGCGTGTCTTGGCTGCTATCGATAANTTTTTCCGGGCTTACAAGAGTTGTGTTGCAAGGTCTTCGAAACCTACCGCTGCA
GGATCAAGTGAAAATTCTCAGCCACATGGTAATACTTCTTTGGGTCACAATGAAATCGAGAAATTCTTGTATGATGATGC
AGCTGCAAATAAAGAAGACGATATAAATGAATTGGATGTCTACATGAAAGAGAAGCCAATTCGTTGGGTTGATCCAACAG
GTGAAGGTGTAGAATTTGACATACTGGCATGGTGGAAGAACAACCAAATGACCTTTCCTATCCTCTCAACACTCGCGCGT
GATGTAATGGCTGTTCAAATCTCTACCGTTGCTTCAGAGTCAGCGTTTAGTGCTGGTGGTCGTGTTGTTGGTCCTTTTCG
CAGTTCTCTACATCCTGAGATGATTGAGGCTCTAGTTTGTACCAAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12861.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis