Browse Element(s) Details


OsAffx.12861.3.S1_x_at

Description tigr:9636.m03727
TID=OsAffx.12861.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3712010/11hypothetical protein
LOC_Os06g107409/11hAT family dimerisation domain containing protein
LOC_Os03g146009/11hAT family dimerisation domain containing protein
LOC_Os10g121409/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37080NANA8+23307846..23308678hypothetical protein
LOC_Os08g37090OsAffx.29568.1.S1_at11/118+23311300..23311809hypothetical protein
LOC_Os08g37104Os.31832.1.S1_at11/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_x_at10/118+23315214..23319987expressed protein
LOC_Os08g37104OsAffx.17372.1.S1_at10/118+23315214..23319987expressed protein
LOC_Os08g37104Os.18383.1.A1_x_at7/118+23315214..23319987expressed protein
LOC_Os08g37120OsAffx.12861.3.S1_x_at10/118+23327503..23330255hypothetical protein
LOC_Os08g37120OsAffx.12861.2.S1_x_at9/118+23327503..23330255hypothetical protein
LOC_Os08g37130Os.7631.1.S1_at11/118+23331091..23335550oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os08g37140OsAffx.17373.1.S1_at11/118+23335901..23339725phosphoglycerate mutase family protein, expressed
LOC_Os08g37150Os.50419.1.S1_x_at4/118+23342499..23343393uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g37160OsAffx.6054.1.S1_at11/118+23345226..23347866Zinc knuckle family protein
LOC_Os08g37170Os.56188.1.S1_at1/118+23348398..23351511retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12861.3.S1_x_at--48--10734Chr10:6517647..6517671 (25 bp)
TTGCTCTCACACTAGACAATGCTTC
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--869--10334Chr10:6517721..6517745 (25 bp)
TTTAACATCAGTAAGGTCCCTCCAT
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--1012--2894Chr10:6517733..6517757 (25 bp)
AAGGTCCCTCCATTGATGTGTGATG
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--818--7771NONE
GGTGCTTTCTTTCATAAGATTTACC
NONE
OsAffx.12861.3.S1_x_at--744--4654Chr10:6518403..6518427 (25 bp)
GCGTGTCTTGGCTGCTATCGATAAA
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--922--10354Chr10:6518429..6518453 (25 bp)
TTTTCCGGGCTTACAAGAGTTGTGT
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--223--1354Chr10:6518444..6518468 (25 bp)
AGAGTTGTGTTGCAAGGTCTTCGAA
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--590--5554Chr10:6518466..6518490 (25 bp)
GAAACCTACCGCTGCAGGATCAAGT
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--215--8974Chr10:6518490..6518514 (25 bp)
TGAAAATTCTCAGCCACATGGTAAT
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--193--3514Chr10:6518506..6518530 (25 bp)
CATGGTAATACTTCTTTGGGTCACA
LOC_Os10g12140
OsAffx.12861.3.S1_x_at--240--7671Chr08:23327879..23328066 (25 bp)
GGGTTGATCCAACAGTTCTAGTTTG
LOC_Os08g37120
Target Sequence 
TTGCTCTCACACTAGACAATGCTTCATCAAATGATAAATGTGCTAGAGAAGTTGTGATAGAGCTTAACAAGCTGTTTAAC
ATCAGTAAGGTCCCTCCATTGATGTGTGATGGTGCTTTCTTTCATAAGATTTACCCTGACAAGTATGAAGAGGAATTTAA
GCGTGTCTTGGCTGCTATCGATAAATTTTTCCGGGCTTACAAGAGTTGTGTTGCAAGGTCTTCGAAACCTACCGCTGCAG
GATCAAGTGAAAATTCTCAGCCACATGGTAATACTTCTTTGGGTCACAATGAAATCGAGAAATTCTTGTATGATGATGCA
GCTGCAAATAAAGAAGACGATATAAATGAATTGGATGTCTACATGAAAGAGAAGCCAATTCGTTGGGTTGATCCAACAGT
TCTAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12861.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis