Browse Element(s) Details


Os.54033.1.S1_at

Description gb:AK101432.1
DB_XREF= gi:32986641
TID=Os.54033.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038K22, full insert sequence.
FL= gb:AK101432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3718011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37130Os.7631.1.S1_at11/118+23331091..23335550oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os08g37140OsAffx.17373.1.S1_at11/118+23335901..23339725phosphoglycerate mutase family protein, expressed
LOC_Os08g37150Os.50419.1.S1_x_at4/118+23342499..23343393uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g37160OsAffx.6054.1.S1_at11/118+23345226..23347866Zinc knuckle family protein
LOC_Os08g37170Os.56188.1.S1_at1/118+23348398..23351511retrotransposon protein, putative, unclassified
LOC_Os08g37180Os.54033.1.S1_at11/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37180OsAffx.17216.1.S1_x_at1/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37180OsAffx.661.1.S1_x_at1/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37190Os.43567.1.S1_x_at6/118+23364852..23366084transposon protein, putative, unclassified
LOC_Os08g37190Os.38172.1.S1_x_at4/118+23364852..23366084transposon protein, putative, unclassified
LOC_Os08g37199NANA8+23369093..23369458NA
LOC_Os08g37210Os.18723.1.S1_at11/118+23370117..23372463Patatin-like phospholipase family protein, expressed
LOC_Os08g37210OsAffx.12972.1.S1_at1/118+23370117..23372463Patatin-like phospholipase family protein, expressed
LOC_Os08g37210OsAffx.17216.1.S1_x_at1/118+23370117..23372463Patatin-like phospholipase family protein, expressed
LOC_Os08g37220NANA8+23382776..23383515hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54033.1.S1_at--667--4731Chr08:23359608..23359632 (25 bp)
GCTGTTCAACAAGGGCGCGACGCCG
LOC_Os08g37180
Os.54033.1.S1_at--42--4171Chr08:23359438..23359462 (25 bp)
CGCCGGAGAACCTCCAGAGGCTCGT
LOC_Os08g37180
Os.54033.1.S1_at--634--5431Chr08:23359353..23359377 (25 bp)
GAACGAGCCGGACATGAACCGGAAA
LOC_Os08g37180
Os.54033.1.S1_at--481--971Chr08:23359318..23359342 (25 bp)
AGGAGCTGGTGCTTTTCGCCGAGAT
LOC_Os08g37180
Os.54033.1.S1_at--962--9331Chr08:23359289..23359313 (25 bp)
TCGCGAGAACGGAAGGCCAGGCTTC
LOC_Os08g37180
Os.54033.1.S1_at--409--5351Chr08:23359245..23359269 (25 bp)
GAAGATCTAGTACATATTGGCAAAT
LOC_Os08g37180
Os.54033.1.S1_at--738--8231Chr08:23359227..23359251 (25 bp)
GGCAAATTGTAGCAGATCTTCGGAT
LOC_Os08g37180
Os.54033.1.S1_at--148--6431Chr08:23359213..23359237 (25 bp)
GATCTTCGGATCAATACTACAGGTC
LOC_Os08g37180
Os.54033.1.S1_at--542--7811Chr08:23359192..23359216 (25 bp)
GGTCTACAACTACTATTGGTGTCAA
LOC_Os08g37180
Os.54033.1.S1_at--151--8751Chr08:23359158..23359182 (25 bp)
TGTAAAATTTATCCGTTCATATTGG
LOC_Os08g37180
Os.54033.1.S1_at--962--8551Chr08:23359136..23359160 (25 bp)
TGGATGTTTGTTGTATCTTCGTAAA
LOC_Os08g37180
Target Sequence 
GCTGTTCAACAAGGGCGCGACGCCGCTGATCGACAGCTTCAGCCAGGCCAGCGCCGACCTCGTCGACATCCACGCATCCG
TGCTCTTCCAGGCGCTGCACTGCGAGAAGCGCTACCTCCGCATCCAGGACGACGAGCTCACCGGCGACGCGGCGTCCGTC
GACGTCTCCACGCCGGAGAACCTCCAGAGGCTCGTCGGCGTCGGCAAGGCGCTGCTCAAGAAGCAGGCGTGCAAGGTCGA
CCTCGAGACCGGCAAGAACGAGCCGGACATGAACCGGAAAAGTAACGAGGAGGAGCTGGTGCTTTTCGCCGAGATGCTGT
CGCGAGAACGGAAGGCCAGGCTTCAGAAAAAGCAGGGGAGCATGAAGATCTAGTACATATTGGCAAATTGTAGCAGATCT
TCGGATCAATACTACAGGTCTACAACTACTATTGGTGTCAAGTGATTGGATGTAAAATTTATCCGTTCATATTGGATGTT
TGTTGTATCTTCGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis