Browse Element(s) Details


Os.12816.1.S1_at

Description gb:U25968.1
DB_XREF= gi:4096172
GEN=OSE351
TID=Os.12816.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12816 (NCBI UniGene Cluster)
DEF=Oryza sativa early embryogenesis protein (OSE351) mRNA, complete cds.
PROD=early embryogenesis protein
FL= gb:U25968.1 gb:AK119657.1 gb:AK105316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0341011/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03360Os.11683.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03360OsAffx.16806.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03370Os.53197.1.S1_at10/118+1571881..1573933Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12816.1.S1_at--149--10651Chr08:1592741..1592765 (25 bp)
TTCGCGTGGGTGTCGTTCCAGACGA
LOC_Os08g03410
Os.12816.1.S1_at--1009--3911Chr08:1592985..1593009 (25 bp)
CGGCCTGAGGCGTACGTAGATACCA
LOC_Os08g03410
Os.12816.1.S1_at--977--10031Chr08:1593001..1593025 (25 bp)
TAGATACCAGCGTGAGCGCACGTGC
LOC_Os08g03410
Os.12816.1.S1_at--272--4591Chr08:1593016..1593040 (25 bp)
GCGCACGTGCGCATGTACATGTAGT
LOC_Os08g03410
Os.12816.1.S1_at--799--2011Chr08:1593041..1593065 (25 bp)
ACTAATAATGTGCACGTTTTCCGTT
LOC_Os08g03410
Os.12816.1.S1_at--799--10291Chr08:1593058..1593082 (25 bp)
TTTCCGTTAAGGGTGCCACGCACTG
LOC_Os08g03410
Os.12816.1.S1_at--418--1851Chr08:1593075..1593099 (25 bp)
ACGCACTGCATGCACCGTATGTTGG
LOC_Os08g03410
Os.12816.1.S1_at--270--731Chr08:1593093..1593117 (25 bp)
ATGTTGGCCCGTACATGTACGGTGT
LOC_Os08g03410
Os.12816.1.S1_at--623--11Chr08:1593111..1593135 (25 bp)
ACGGTGTACCCGATCTAGAATAAAT
LOC_Os08g03410
Os.12816.1.S1_at--47--9351Chr08:1593140..1593164 (25 bp)
TCGCTGCTGCTACCAAAGTGCAGTG
LOC_Os08g03410
Os.12816.1.S1_at--341--4851Chr08:1593148..1593172 (25 bp)
GCTACCAAAGTGCAGTGTGTTAATT
LOC_Os08g03410
Target Sequence 
TTCGCGTGGGTGTCGTTCCAGACGAGCGACGGCGCCATGAACGCGCCGGTGGTTGGCAAGTCGTCGGCGCTGCGCGGGAT
GCCGGCGGACGTGCTGGNCAACGCGTTCGGCGTGTCGAGGGAGGAGGCGCGCATGGTCAAGTTCGGGAGGGGGCAGGAGC
TCGCCATCTTCTCCCCCAAGTCCGGCGCCGCCGCCCGCCGCCGCCGCTCTCCCGGCCACAGGGACGACGGCGTGCTCGCC
GCCCCGGCCTGAGGCGTACGTAGATACCAGCGTGAGCGCACGTGCGCATGTACATGTAGTACTAATAATGTGCACGTTTT
CCGTTAAGGGTGCCACGCACTGCATGCACCGTATGTTGGCCCGTACATGTACGGTGTACCCGATCTAGAATAAATGAAGT
CGCTGCTGCTACCAAAGTGCAGTGTGTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis