Browse Element(s) Details


Os.53197.1.S1_at

Description gb:AK071322.1
DB_XREF= gi:32981345
TID=Os.53197.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087N16, full insert sequence.
FL= gb:AK071322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0337010/11Uncharacterized BCR, COG1963 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03360Os.11683.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03360OsAffx.16806.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03370Os.53197.1.S1_at10/118+1571881..1573933Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53197.1.S1_at--875--9191Chr08:1572367..1572391 (25 bp)
TCCAGGAAGGGTTCGGCAGCTCGCT
LOC_Os08g03370
Os.53197.1.S1_at--836--9551NONE
TCTTCGCGTCCGTGGTTATGTATGA
NONE
Os.53197.1.S1_at--867--3171Chr08:1573382..1573406 (25 bp)
AATTGTGTATGAACTCCCATCGGAG
LOC_Os08g03370
Os.53197.1.S1_at--798--491Chr08:1573400..1573424 (25 bp)
ATCGGAGCATCCACTGGCTGAAACA
LOC_Os08g03370
Os.53197.1.S1_at--59--8531Chr08:1573445..1573467 (23 bp)
TGGACACACACCAGCTCAGGTTTTT
LOC_Os08g03370
Os.53197.1.S1_at--981--10671Chr08:1573620..1573644 (25 bp)
TTGCAGTGGCCACATTTACAGGCAT
LOC_Os08g03370
Os.53197.1.S1_at--220--1611Chr08:1573648..1573672 (25 bp)
AGCTGGGCTTGGTAACACTGGTTCA
LOC_Os08g03370
Os.53197.1.S1_at--486--71Chr08:1573672..1573696 (25 bp)
ATTGCCCTGACTGCCGGATTGGCGA
LOC_Os08g03370
Os.53197.1.S1_at--377--4631Chr08:1573693..1573717 (25 bp)
GCGATATTTGTAGCTTCACGCCAAA
LOC_Os08g03370
Os.53197.1.S1_at--1145--571Chr08:1573735..1573759 (25 bp)
ATCCAAATCGGTTATGCGTTTTCGG
LOC_Os08g03370
Os.53197.1.S1_at--585--5211Chr08:1573801..1573825 (25 bp)
GAATTCGTAAGCCAATCTCATGTGA
LOC_Os08g03370
Target Sequence 
TCCAGGAAGGGTTCGGCAGCTCGCTCTTCGCCACCGCCGCCATCTTCGCGTCCGTGGTTATGTATGATGCTTTTGGTGTC
AGGCTACATGCAGGGAAGCAAGCAGAGGTCTTGAATCAAATTGTGTATGAACTCCCATCGGAGCATCCACTGGCTGAAAC
AAGACCACTCCGAGAACTCCTTGGACACACACCAGCTCAGGTTTTTGCTGGTGGGGTGCTTGGATTTGCAGTGGCCACAT
TTACAGGCATGATAGCTGGGCTTGGTAACACTGGTTCATTGCCCTGACTGCCGGATTGGCGATATTTGTAGCTTCACGCC
AAATTTGTTGAAGTGTTAGAATCCAAATCGGTTATGCGTTTTCGGGTCGCGTACAGGAGTATGTAAAGTTTTTTTTTTCT
TTTGTGGAATTCGTAAGCCAATCTCATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis