Browse Element(s) Details


Os.23881.1.A1_at

Description gb:AK122021.1
DB_XREF= gi:37991644
TID=Os.23881.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111O03, full insert sequence.
FL= gb:AK122021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0355011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23881.1.A1_at--1116--7971Chr08:1643211..1643235 (25 bp)
GGATGACAACCCTCCTGACCAAAAT
LOC_Os08g03550
Os.23881.1.A1_at--487--6311Chr08:1643183..1643207 (25 bp)
GATGACCATCCAAAGCCTGTCAAGT
LOC_Os08g03550
Os.23881.1.A1_at--247--7091Chr08:1643165..1643189 (25 bp)
GTCAAGTTATCCATCAAGCAGCAAA
LOC_Os08g03550
Os.23881.1.A1_at--254--1291Chr08:1643125..1643149 (25 bp)
AGATGACTGAGCTCCTTGCTAAGAT
LOC_Os08g03550
Os.23881.1.A1_at--458--5351Chr08:1643073..1643097 (25 bp)
GAAGATCTGCTCTGGTATTGCGGCG
LOC_Os08g03550
Os.23881.1.A1_at--255--10231Chr08:1643058..1643082 (25 bp)
TATTGCGGCGCAGCTGTTTGGAAAG
LOC_Os08g03550
Os.23881.1.A1_at--136--6671Chr08:1643006..1643030 (25 bp)
GTTGCATCTGTTACGATTCCTTATT
LOC_Os08g03550
Os.23881.1.A1_at--1144--9751Chr08:1642874..1642898 (25 bp)
TAATCTGTTCAGACCCAATGCTTGT
LOC_Os08g03550
Os.23881.1.A1_at--69--5811Chr08:1642863..1642887 (25 bp)
GACCCAATGCTTGTCTACACTAGAA
LOC_Os08g03550
Os.23881.1.A1_at--221--8671Chr08:1642810..1642834 (25 bp)
TGCTTAACCTACTGTTCGTTTAATG
LOC_Os08g03550
Os.23881.1.A1_at--415--5951Chr08:1642744..1642768 (25 bp)
GAGCAACACAGTAGTTTGACCAGTT
LOC_Os08g03550
Target Sequence 
GGATGACAACCCTCCTGACCAAAATCCAGATGACCATCCAAAGCCTGTCAAGTTATCCATCAAGCAGCAAATGGAGAGAG
GTGCAAAGATGACTGAGCTCCTTGCTAAGATGATAAGAGCACAGAGTGNGNTTGATCTGAAGATCTGCTCTGGTATTGCG
GCGCAGCTGTTTGGAAAGAAGAATGAATTGAGCAACCAAGAATCTGTTGCATCTGTTACGATTCCTTATTCTTTTCCAAA
GCTCTGGACTAGGGTGGAGATTGATGATGCCATGATGTGTAAGATCAACGGCGAATTTTNGTNTTCGACAGAGGTAATGC
AGCTATAAACCTGGAATTAATCTGTTCAGACCCAATGCTTGTCTACACTAGAAGAACATGGTTGAACCACAGCTTCTTTT
NTGCTTAACCTACTGTTCGTTTAATGTAAGCAATTGTAATTGTTTTCATCAGAGACAAAAACCATGAGAGCAACACAGTA
GTTTGACCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23881.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis