Browse Element(s) Details


Os.54141.1.S1_at

Description gb:AK102166.1
DB_XREF= gi:32987375
TID=Os.54141.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086H09, full insert sequence.
FL= gb:AK102166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0356010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein
LOC_Os08g03570Os.5729.1.S1_at11/118+1660624..1665750UDP-glucose 4-epimerase family protein, expressed
LOC_Os08g03579Os.12420.3.S1_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_a_at11/118+1668688..1670402expressed protein
LOC_Os08g03579Os.12420.2.S1_x_at6/118+1668688..1670402expressed protein
LOC_Os08g03590NANA8+1671548..1673150hypothetical protein
LOC_Os08g03600OsAffx.29016.1.S1_at11/118+1675189..1677799magnesium transporter CorA, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54141.1.S1_at--498--5891Chr08:1648259..1648283 (25 bp)
GAGCGGAGTGTCTACAATCTTCTGA
LOC_Os08g03560
Os.54141.1.S1_at--158--9571Chr08:1648242..1648266 (25 bp)
TCTTCTGAGGACAAGGGATGCTACG
LOC_Os08g03560
Os.54141.1.S1_at--469--2871Chr08:1648230..1648254 (25 bp)
AAGGGATGCTACGATGAGACAGTGT
LOC_Os08g03560
Os.54141.1.S1_at--169--1351Chr08:1648203..1648227 (25 bp)
AGAGTTTAATATTCCTACTGACTGG
LOC_Os08g03560
Os.54141.1.S1_at--488--91Chr08:1648193..1648217 (25 bp)
ATTCCTACTGACTGGATGCTCGACA
LOC_Os08g03560
Os.54141.1.S1_at--1015--7951Chr08:1647119..1647143 (25 bp)
GGATAATTCTAGCTTACTCTCTCAG
LOC_Os08g03560
Os.54141.1.S1_at--594--10471Chr08:1647106..1647130 (25 bp)
TTACTCTCTCAGTAAGCATAGCAGA
LOC_Os08g03560
Os.54141.1.S1_at--121--1531Chr08:1647087..1647111 (25 bp)
AGCAGAGAGCTTTGTTTTGGTTTAT
LOC_Os08g03560
Os.54141.1.S1_at--739--7431Chr08:1647036..1647060 (25 bp)
GTGTATGACTGTATCTATGTGTTTC
LOC_Os08g03560
Os.54141.1.S1_at--120--10111Chr08:1647021..1647045 (25 bp)
TATGTGTTTCAGTGTGTGCTAGGCT
LOC_Os08g03560
Os.54141.1.S1_at--32--6551Chr08:1646969..1646993 (25 bp)
GATTTTTGTAGCTACCATGACTGAA
NONE
Target Sequence 
GAGCGGAGTGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAGACAGTGTAAAGAGTTTAATATTCCTACTGACTG
GATGCTCGACAACAATCTTATTGGCAAGATAAAATTTTCTTCTGTCAAATTAGCAAAGATGTACATGAAAAGAGTTGCTA
TGGAACTTCAATACATGGGACCTCTGAACAAAGATCCAGCTTTGGAGTATATGCTACTTCAGGCTGTGAGATTTGCCTTC
AGAATGCATCAGTTTGCTGGGGGNATTCGATCCAGAGACCATGGATGCATTTGAAGAGCTGAGGAATCTTGTGCATGTCA
GAAACAGCACCCAGTAGGAAGTTAAAAAAATGTGGAGAAGGGGATAATTCTAGCTTACTCTCTCAGTAAGCATAGCAGAG
AGCTTTGTTTTGGTTTATGTGATTGTGTGATTGATGATTAGTGTGTGTATGACTGTATCTATGTGTTTCAGTGTGTGCTA
GGCTGAAGAACACCAGCTGGTGTTTGCCTATGATTTTTGTAGCTACCATGACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis